Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | Z _ _is_template (sleap.skeleton.Skeleton attribute) _skeleton_idx (sleap.skeleton.Skeleton attribute) A activation (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) (sleap.nn.heads.ClassMapsHead property) (sleap.nn.heads.ClassVectorsHead property) (sleap.nn.heads.Head property) Adaptor (class in sleap.io.format.adaptor) add_edge() (sleap.skeleton.Skeleton method) add_instance() (sleap.io.dataset.Labels method) (sleap.io.dataset.LabelsDataCache method) add_node() (sleap.skeleton.Skeleton method) add_nodes() (sleap.skeleton.Skeleton method) add_suggestion() (sleap.io.dataset.Labels method) add_symmetry() (sleap.skeleton.Skeleton method) add_track() (sleap.io.dataset.Labels method) (sleap.io.dataset.LabelsDataCache method) add_video() (sleap.io.dataset.Labels method) adjust_prefix() (in module sleap.nn.architectures.hrnet) align_instance_points() (in module sleap.info.align) align_instances() (in module sleap.info.align) align_instances_on_most_stable() (in module sleap.info.align) all_exts (sleap.io.format.adaptor.Adaptor property) (sleap.io.format.alphatracker.AlphaTrackerAdaptor property) (sleap.io.format.coco.LabelsCocoAdaptor property) (sleap.io.format.csv.CSVAdaptor property) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor property) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor property) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor property) (sleap.io.format.genericjson.GenericJsonAdaptor property) (sleap.io.format.hdf5.LabelsV1Adaptor property) (sleap.io.format.labels_json.LabelsJsonAdaptor property) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor property) (sleap.io.format.ndx_pose.NDXPoseAdaptor property) (sleap.io.format.nix.NixAdaptor property) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor property) (sleap.io.format.text.TextAdaptor property) all_instances (sleap.io.dataset.Labels property) (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator attribute) all_items (sleap.info.feature_suggestions.FrameGroupSet property) AlphaTrackerAdaptor (class in sleap.io.format.alphatracker) anchor_part (sleap.nn.config.model.CenteredInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.CentroidsHeadConfig attribute) (sleap.nn.heads.CenteredInstanceConfmapsHead attribute) (sleap.nn.heads.CentroidConfmapsHead attribute) anchor_part_names (sleap.nn.data.instance_centroids.InstanceCentroidFinder attribute) append() (sleap.io.dataset.Labels method) (sleap.nn.data.pipelines.Pipeline method) append_suggestions() (sleap.io.dataset.Labels method) append_to_group() (sleap.info.feature_suggestions.FrameGroupSet method) architecture_graph (sleap.nn.config.outputs.TensorBoardConfig attribute) as_node() (sleap.skeleton.Node class method) assign_connections_to_instances() (in module sleap.nn.paf_grouping) AsyncVideo (class in sleap.io.asyncvideo) AsyncVideoServer (class in sleap.io.asyncvideo) attr_to_dtype() (in module sleap.util) augmentation_config (sleap.nn.config.optimization.OptimizationConfig attribute) AugmentationConfig (class in sleap.nn.config.optimization) augmenter (sleap.nn.data.augmentation.ImgaugAugmenter attribute) available_video_exts() (in module sleap.io.video) B backbone (sleap.nn.config.model.ModelConfig attribute) (sleap.nn.model.Model attribute) BackboneConfig (class in sleap.nn.config.model) base_checkpoint (sleap.nn.config.model.ModelConfig attribute) BaseMessageParticipant (class in sleap.message) BaseTracker (class in sleap.nn.tracking) batch_norm (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) batch_norm_before_activation (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) batch_size (sleap.nn.config.optimization.OptimizationConfig attribute) (sleap.nn.data.dataset_ops.Batcher attribute) (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.inference.MoveNetPredictor attribute) (sleap.nn.inference.SingleInstancePredictor attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) Batcher (class in sleap.nn.data.dataset_ops) batches_per_epoch (sleap.nn.config.optimization.OptimizationConfig attribute) best_logical_device_name() (in module sleap.nn.system) best_model (sleap.nn.config.outputs.CheckpointingConfig attribute) bilinear_upsampling (sleap.nn.architectures.hrnet.HigherHRNet attribute) block_contraction (sleap.nn.architectures.unet.UNet attribute) block_prefix (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) block_stride (sleap.nn.config.model.UpsamplingConfig attribute) block_v1() (in module sleap.nn.architectures.resnet) bottleneck (sleap.nn.architectures.hrnet.HigherHRNet attribute) bottleneck_block() (in module sleap.nn.architectures.hrnet) bottomup_config (sleap.nn.inference.BottomUpPredictor attribute) bottomup_layer (sleap.nn.inference.BottomUpInferenceModel attribute) bottomup_model (sleap.nn.inference.BottomUpPredictor attribute) BottomUpInferenceLayer (class in sleap.nn.inference) BottomUpInferenceModel (class in sleap.nn.inference) BottomUpModelTrainer (class in sleap.nn.training) BottomUpMultiClassInferenceLayer (class in sleap.nn.inference) BottomUpMultiClassInferenceModel (class in sleap.nn.inference) BottomUpMultiClassModelTrainer (class in sleap.nn.training) BottomUpMultiClassPipeline (class in sleap.nn.data.pipelines) BottomUpMultiClassPredictor (class in sleap.nn.inference) BottomUpPipeline (class in sleap.nn.data.pipelines) BottomUpPredictor (class in sleap.nn.inference) bounding_box (sleap.instance.Instance property) brightness (sleap.nn.config.optimization.AugmentationConfig attribute) brightness_max_val (sleap.nn.config.optimization.AugmentationConfig attribute) brightness_min_val (sleap.nn.config.optimization.AugmentationConfig attribute) brisk_bag_of_features() (sleap.info.feature_suggestions.ItemStack method) buffer_size (sleap.nn.data.dataset_ops.Prefetcher attribute) (sleap.nn.data.dataset_ops.Shuffler attribute) C C (sleap.nn.architectures.hrnet.HigherHRNet attribute) calculate_pairwise_cost() (in module sleap.info.metrics) call() (sleap.nn.inference.BottomUpInferenceLayer method) (sleap.nn.inference.BottomUpInferenceModel method) (sleap.nn.inference.BottomUpMultiClassInferenceLayer method) (sleap.nn.inference.BottomUpMultiClassInferenceModel method) (sleap.nn.inference.CentroidCrop method) (sleap.nn.inference.CentroidCropGroundTruth method) (sleap.nn.inference.CentroidInferenceModel method) (sleap.nn.inference.FindInstancePeaks method) (sleap.nn.inference.FindInstancePeaksGroundTruth method) (sleap.nn.inference.InferenceLayer method) (sleap.nn.inference.MoveNetInferenceLayer method) (sleap.nn.inference.MoveNetInferenceModel method) (sleap.nn.inference.SingleInstanceInferenceLayer method) (sleap.nn.inference.SingleInstanceInferenceModel method) (sleap.nn.inference.TopDownInferenceModel method) (sleap.nn.inference.TopDownMultiClassFindPeaks method) (sleap.nn.inference.TopDownMultiClassInferenceModel method) (sleap.nn.losses.OHKMLoss method) callbacks (sleap.nn.training.Trainer property) can_read_file() (sleap.io.format.adaptor.Adaptor method) (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) (sleap.io.format.coco.LabelsCocoAdaptor method) (sleap.io.format.csv.CSVAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor method) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor method) (sleap.io.format.genericjson.GenericJsonAdaptor method) (sleap.io.format.hdf5.LabelsV1Adaptor method) (sleap.io.format.labels_json.LabelsJsonAdaptor method) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor method) (sleap.io.format.ndx_pose.NDXPoseAdaptor method) (sleap.io.format.nix.NixAdaptor class method) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor method) (sleap.io.format.text.TextAdaptor method) can_write_filename() (sleap.io.format.adaptor.Adaptor method) (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) (sleap.io.format.coco.LabelsCocoAdaptor method) (sleap.io.format.csv.CSVAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor method) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor method) (sleap.io.format.genericjson.GenericJsonAdaptor method) (sleap.io.format.hdf5.LabelsV1Adaptor method) (sleap.io.format.labels_json.LabelsJsonAdaptor method) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor method) (sleap.io.format.ndx_pose.NDXPoseAdaptor method) (sleap.io.format.nix.NixAdaptor method) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor method) (sleap.io.format.text.TextAdaptor method) candidate_maker (sleap.nn.tracking.Tracker attribute) cattr() (sleap.io.video.Video static method) center_on_anchor_part (sleap.nn.data.instance_centroids.InstanceCentroidFinder attribute) center_on_part (sleap.nn.config.data.InstanceCroppingConfig attribute) center_pad (sleap.nn.data.resizing.SizeMatcher attribute) centered_instance (sleap.nn.config.model.HeadsConfig attribute) CenteredInstanceConfmapsHead (class in sleap.nn.heads) CenteredInstanceConfmapsHeadConfig (class in sleap.nn.config.model) centroid (sleap.instance.Instance property) (sleap.nn.config.model.HeadsConfig attribute) centroid_config (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) centroid_confmap_head (sleap.nn.data.pipelines.CentroidConfmapsPipeline attribute) centroid_crop (sleap.nn.inference.CentroidInferenceModel attribute) (sleap.nn.inference.TopDownInferenceModel attribute) (sleap.nn.inference.TopDownMultiClassInferenceModel attribute) centroid_distance() (in module sleap.nn.tracker.components) centroid_model (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) CentroidConfmapsHead (class in sleap.nn.heads) CentroidConfmapsModelTrainer (class in sleap.nn.training) CentroidConfmapsPipeline (class in sleap.nn.data.pipelines) CentroidCrop (class in sleap.nn.inference) CentroidCropGroundTruth (class in sleap.nn.inference) CentroidInferenceModel (class in sleap.nn.inference) centroids (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator attribute) (sleap.nn.data.identity.ClassMapGenerator attribute) centroids_key (sleap.nn.data.instance_cropping.InstanceCropper attribute) CentroidsHeadConfig (class in sleap.nn.config.model) channel_ind (sleap.nn.losses.PartLoss attribute) channels (sleap.io.video.HDF5Video property) (sleap.io.video.ImgStoreVideo property) (sleap.io.video.MediaVideo property) (sleap.io.video.NumpyVideo property) (sleap.io.video.SingleImageVideo property) (sleap.nn.heads.CenteredInstanceConfmapsHead property) (sleap.nn.heads.CentroidConfmapsHead property) (sleap.nn.heads.ClassMapsHead property) (sleap.nn.heads.ClassVectorsHead property) (sleap.nn.heads.Head property) (sleap.nn.heads.MultiInstanceConfmapsHead property) (sleap.nn.heads.OffsetRefinementHead property) (sleap.nn.heads.PartAffinityFieldsHead property) (sleap.nn.heads.SingleInstanceConfmapsHead property) check() (sleap.io.video.HDF5Video method) check_message() (sleap.message.Receiver method) check_messages() (sleap.message.Receiver method) checkpointing (sleap.nn.config.outputs.OutputsConfig attribute) CheckpointingConfig (class in sleap.nn.config.outputs) chunks (sleap.io.asyncvideo.AsyncVideo property) class_map_threshold (sleap.nn.data.identity.ClassMapGenerator attribute) class_maps (sleap.nn.config.model.MultiClassBottomUpConfig attribute) class_maps_head (sleap.nn.data.pipelines.BottomUpMultiClassPipeline attribute) class_maps_ind (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) class_maps_output_stride (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) class_vectors (sleap.nn.config.model.MultiClassTopDownConfig attribute) class_vectors_head (sleap.nn.data.pipelines.TopDownMultiClassPipeline attribute) class_vectors_ind (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) classes (sleap.nn.config.model.ClassMapsHeadConfig attribute) (sleap.nn.config.model.ClassVectorsHeadConfig attribute) (sleap.nn.heads.ClassMapsHead attribute), [1] (sleap.nn.heads.ClassVectorsHead attribute), [1] classify_peaks_from_maps() (in module sleap.nn.identity) classify_peaks_from_vectors() (in module sleap.nn.identity) ClassMapGenerator (class in sleap.nn.data.identity) ClassMapsHead (class in sleap.nn.heads) ClassMapsHeadConfig (class in sleap.nn.config.model) ClassVectorGenerator (class in sleap.nn.data.identity) ClassVectorsHead (class in sleap.nn.heads) ClassVectorsHeadConfig (class in sleap.nn.config.model) cleaner (sleap.nn.tracking.Tracker attribute) cleanup() (sleap.nn.training.Trainer method) clear_edges() (sleap.skeleton.Skeleton method) clear_suggestions() (sleap.io.dataset.Labels method) close() (sleap.io.asyncvideo.AsyncVideo method) (sleap.io.format.filehandle.FileHandle method) (sleap.io.video.HDF5Video method) (sleap.io.video.ImgStoreVideo method) cm_output_stride (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) compare_instance_lists() (in module sleap.info.metrics) complex_frame_merge() (sleap.instance.LabeledFrame class method) complex_merge_between() (sleap.instance.LabeledFrame class method) (sleap.io.dataset.Labels class method) compute_dist_metrics() (in module sleap.nn.evals) compute_distance_penalty() (in module sleap.nn.paf_grouping) compute_dists() (in module sleap.nn.evals) compute_generalized_voc_metrics() (in module sleap.nn.evals) compute_instance_area() (in module sleap.nn.evals) compute_iou() (in module sleap.nn.utils) compute_ohkm_loss() (in module sleap.nn.losses) compute_oks() (in module sleap.nn.evals) compute_pck_metrics() (in module sleap.nn.evals) compute_visibility_conf() (in module sleap.nn.evals) config (sleap.nn.heads.CenteredInstanceConfmapsHead attribute) (sleap.nn.heads.CentroidConfmapsHead attribute) (sleap.nn.heads.ClassMapsHead attribute) (sleap.nn.heads.ClassVectorsHead attribute) (sleap.nn.heads.MultiInstanceConfmapsHead attribute) (sleap.nn.heads.OffsetRefinementHead attribute) (sleap.nn.heads.PartAffinityFieldsHead attribute) (sleap.nn.heads.SingleInstanceConfmapsHead attribute) (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.training.Trainer attribute) confmap_config (sleap.nn.inference.SingleInstancePredictor attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) confmap_model (sleap.nn.inference.SingleInstancePredictor attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) confmaps (sleap.nn.config.model.MultiClassBottomUpConfig attribute) (sleap.nn.config.model.MultiClassTopDownConfig attribute) (sleap.nn.config.model.MultiInstanceConfig attribute) confmaps_head (sleap.nn.data.pipelines.BottomUpMultiClassPipeline attribute) (sleap.nn.data.pipelines.BottomUpPipeline attribute) (sleap.nn.data.pipelines.TopDownMultiClassPipeline attribute) confmaps_ind (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) connect_single_track_breaks() (in module sleap.nn.tracker.components) contrast (sleap.nn.config.optimization.AugmentationConfig attribute) contrast_max_gamma (sleap.nn.config.optimization.AugmentationConfig attribute) contrast_min_gamma (sleap.nn.config.optimization.AugmentationConfig attribute) controller_address (sleap.nn.config.outputs.ZMQConfig attribute) controller_polling_timeout (sleap.nn.config.outputs.ZMQConfig attribute) conv() (in module sleap.nn.architectures.hourglass) conv_batchnorm (sleap.nn.config.model.UpsamplingConfig attribute) convert_rgb_to_bgr() (in module sleap.nn.data.normalization) convs_per_block (sleap.nn.architectures.unet.UNet attribute) copy() (sleap.io.dataset.Labels method) cost_matrix (sleap.nn.tracker.components.FrameMatches attribute) create_trainer_using_cli() (in module sleap.nn.training) crf (sleap.io.videowriter.VideoWriterSkvideo attribute) crop_bboxes() (in module sleap.nn.data.instance_cropping) (in module sleap.nn.peak_finding) crop_height (sleap.nn.data.augmentation.RandomCropper attribute) (sleap.nn.data.instance_cropping.InstanceCropper attribute) crop_size (sleap.nn.config.data.InstanceCroppingConfig attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.CentroidCropGroundTruth attribute) crop_size_detection_padding (sleap.nn.config.data.InstanceCroppingConfig attribute) crop_width (sleap.nn.data.augmentation.RandomCropper attribute) (sleap.nn.data.instance_cropping.InstanceCropper attribute) CSVAdaptor (class in sleap.io.format.csv) cull_frame_instances() (in module sleap.nn.tracker.components) cull_instances() (in module sleap.nn.tracker.components) current_groupset (sleap.info.feature_suggestions.ItemStack property) D data (sleap.info.feature_suggestions.ItemStack attribute) (sleap.nn.config.training_job.TrainingJobConfig attribute) data_config (sleap.nn.data.pipelines.BottomUpMultiClassPipeline attribute) (sleap.nn.data.pipelines.BottomUpPipeline attribute) (sleap.nn.data.pipelines.CentroidConfmapsPipeline attribute) (sleap.nn.data.pipelines.SingleInstanceConfmapsPipeline attribute) (sleap.nn.data.pipelines.TopdownConfmapsPipeline attribute) (sleap.nn.data.pipelines.TopDownMultiClassPipeline attribute) data_readers (sleap.nn.training.Trainer attribute) DataConfig (class in sleap.nn.config.data) DataReaders (class in sleap.nn.training) decode_preview_image() (in module sleap.util) decoder_batchnorm (sleap.nn.config.model.PretrainedEncoderConfig attribute) decoder_features_stride (sleap.nn.architectures.encoder_decoder.EncoderDecoder property) decoder_filters (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder attribute) (sleap.nn.config.model.PretrainedEncoderConfig attribute) decoder_filters_rate (sleap.nn.config.model.PretrainedEncoderConfig attribute) decoder_stack (sleap.nn.architectures.encoder_decoder.EncoderDecoder property) (sleap.nn.architectures.hourglass.Hourglass property) (sleap.nn.architectures.leap.LeapCNN property) (sleap.nn.architectures.unet.UNet property) DecoderBlock (class in sleap.nn.architectures.encoder_decoder) deconv_filters (sleap.nn.architectures.hrnet.HigherHRNet attribute) default_ext (sleap.io.format.adaptor.Adaptor property) (sleap.io.format.alphatracker.AlphaTrackerAdaptor property) (sleap.io.format.coco.LabelsCocoAdaptor property) (sleap.io.format.csv.CSVAdaptor property) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor property) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor property) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor property) (sleap.io.format.genericjson.GenericJsonAdaptor property) (sleap.io.format.hdf5.LabelsV1Adaptor property) (sleap.io.format.labels_json.LabelsJsonAdaptor property) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor property) (sleap.io.format.ndx_pose.NDXPoseAdaptor property) (sleap.io.format.nix.NixAdaptor property) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor property) (sleap.io.format.text.TextAdaptor property) delete_edge() (sleap.skeleton.Skeleton method) delete_node() (sleap.skeleton.Skeleton method) delete_suggestions() (sleap.io.dataset.Labels method) delete_symmetry() (sleap.skeleton.Skeleton method) delete_viz_images (sleap.nn.config.outputs.OutputsConfig attribute) describe() (sleap.io.dataset.Labels method) (sleap.nn.data.pipelines.Pipeline method) describe_tensors() (in module sleap.nn.data.utils) description (sleap.nn.config.training_job.TrainingJobConfig attribute) (sleap.skeleton.Skeleton attribute) dict_cut() (in module sleap.util) disable_preallocation() (in module sleap.nn.system) dist_penalty_weight (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.paf_grouping.PAFScorer attribute) distance_to_edge() (in module sleap.nn.data.edge_maps) does_match_ext() (sleap.io.format.adaptor.Adaptor method) (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) does_read() (sleap.io.format.adaptor.Adaptor method) (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) (sleap.io.format.coco.LabelsCocoAdaptor method) (sleap.io.format.csv.CSVAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor method) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor method) (sleap.io.format.genericjson.GenericJsonAdaptor method) (sleap.io.format.hdf5.LabelsV1Adaptor method) (sleap.io.format.labels_json.LabelsJsonAdaptor method) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor method) (sleap.io.format.ndx_pose.NDXPoseAdaptor method) (sleap.io.format.nix.NixAdaptor class method) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor method) (sleap.io.format.text.TextAdaptor method) does_write() (sleap.io.format.adaptor.Adaptor method) (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) (sleap.io.format.coco.LabelsCocoAdaptor method) (sleap.io.format.csv.CSVAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor method) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor method) (sleap.io.format.genericjson.GenericJsonAdaptor method) (sleap.io.format.hdf5.LabelsV1Adaptor method) (sleap.io.format.labels_json.LabelsJsonAdaptor method) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor method) (sleap.io.format.ndx_pose.NDXPoseAdaptor method) (sleap.io.format.nix.NixAdaptor class method) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor method) (sleap.io.format.text.TextAdaptor method) down_blocks (sleap.nn.architectures.hourglass.Hourglass attribute) (sleap.nn.architectures.hrnet.HigherHRNet property) (sleap.nn.architectures.leap.LeapCNN attribute) (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder property) (sleap.nn.architectures.resnet.ResNetv1 property) (sleap.nn.architectures.unet.UNet attribute) down_convs_per_block (sleap.nn.architectures.leap.LeapCNN attribute) DownsamplingBlock (class in sleap.nn.architectures.hourglass) drop_remainder (sleap.nn.data.dataset_ops.Batcher attribute) dst_node_ind (sleap.nn.paf_grouping.EdgeType attribute) dst_peak_ind (sleap.nn.paf_grouping.EdgeConnection attribute) dtype (sleap.instance.Point attribute) (sleap.instance.PredictedPoint attribute) (sleap.io.video.HDF5Video property) (sleap.io.video.ImgStoreVideo property) (sleap.io.video.MediaVideo property) (sleap.io.video.NumpyVideo property) (sleap.io.video.SingleImageVideo property) DummyVideo (class in sleap.io.video) E early_stopping (sleap.nn.config.optimization.OptimizationConfig attribute) EarlyStoppingConfig (class in sleap.nn.config.optimization) edge_inds (sleap.nn.paf_grouping.PAFScorer attribute) (sleap.skeleton.Skeleton property) edge_names (sleap.skeleton.Skeleton property) edge_to_index() (sleap.skeleton.Skeleton method) edge_types (sleap.nn.paf_grouping.PAFScorer attribute) EdgeConnection (class in sleap.nn.paf_grouping) edges (sleap.nn.config.model.PartAffinityFieldsHeadConfig attribute) (sleap.nn.heads.PartAffinityFieldsHead attribute), [1] (sleap.nn.paf_grouping.PAFScorer attribute) (sleap.skeleton.Skeleton property) edges_full (sleap.skeleton.Skeleton property) EdgeType (class in sleap.nn.paf_grouping) (class in sleap.skeleton) embedded_frame_inds (sleap.io.video.HDF5Video property) enable_preallocation() (in module sleap.nn.system) enable_source_video (sleap.io.video.HDF5Video property) encoder (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder attribute) (sleap.nn.config.model.PretrainedEncoderConfig attribute) encoder_features_stride (sleap.nn.architectures.encoder_decoder.EncoderDecoder property) encoder_stack (sleap.nn.architectures.encoder_decoder.EncoderDecoder property) (sleap.nn.architectures.hourglass.Hourglass property) (sleap.nn.architectures.leap.LeapCNN property) (sleap.nn.architectures.unet.UNet property) EncoderBlock (class in sleap.nn.architectures.encoder_decoder) EncoderDecoder (class in sleap.nn.architectures.encoder_decoder) ensure_float (sleap.nn.data.normalization.Normalizer attribute) (sleap.nn.inference.InferenceLayer attribute) (sleap.nn.inference.MoveNetInferenceLayer attribute) ensure_float() (in module sleap.nn.data.normalization) ensure_grayscale (sleap.nn.config.data.PreprocessingConfig attribute) (sleap.nn.data.normalization.Normalizer attribute) (sleap.nn.inference.InferenceLayer attribute) (sleap.nn.inference.MoveNetInferenceLayer attribute) ensure_grayscale() (in module sleap.nn.data.normalization) ensure_int() (in module sleap.nn.data.normalization) ensure_list() (in module sleap.nn.data.utils) ensure_min_image_rank() (in module sleap.nn.data.normalization) ensure_rgb (sleap.nn.config.data.PreprocessingConfig attribute) (sleap.nn.data.normalization.Normalizer attribute) ensure_rgb() (in module sleap.nn.data.normalization) epochs (sleap.nn.config.optimization.OptimizationConfig attribute) (sleap.nn.data.dataset_ops.Repeater attribute) evaluate() (in module sleap.nn.evals) (sleap.nn.training.Trainer method) evaluate_model() (in module sleap.nn.evals) event (sleap.nn.callbacks.ModelCheckpointOnEvent attribute) every_epoch (sleap.nn.config.outputs.CheckpointingConfig attribute) example_indices (sleap.nn.data.providers.LabelsReader attribute) (sleap.nn.data.providers.VideoReader attribute) examples (sleap.nn.data.dataset_ops.Preloader attribute) expand_to_rank() (in module sleap.nn.data.utils) export() (sleap.io.dataset.Labels method) export_cli() (in module sleap.nn.inference) export_model() (in module sleap.nn.inference) (sleap.nn.inference.InferenceModel method) (sleap.nn.inference.Predictor method) (sleap.nn.inference.SingleInstancePredictor method) (sleap.nn.inference.TopDownMultiClassInferenceModel method) (sleap.nn.inference.TopDownMultiClassPredictor method) (sleap.nn.inference.TopDownPredictor method) export_nwb() (sleap.io.dataset.Labels method) extend_from() (sleap.io.dataset.Labels method) extend_group_items() (sleap.info.feature_suggestions.FrameGroupSet method) extend_ownership() (sleap.info.feature_suggestions.ItemStack method) extract() (sleap.io.dataset.Labels method) F features_output_stride (sleap.nn.architectures.resnet.ResNet101 attribute) (sleap.nn.architectures.resnet.ResNet152 attribute) (sleap.nn.architectures.resnet.ResNet50 attribute) (sleap.nn.architectures.resnet.ResNetv1 attribute) file (sleap.io.format.filehandle.FileHandle property) FileHandle (class in sleap.io.format.filehandle) filename (sleap.io.videowriter.VideoWriterSkvideo attribute) (sleap.nn.config.training_job.TrainingJobConfig attribute) filenames_prefix_change() (in module sleap.io.pathutils) filepath (sleap.nn.callbacks.ModelCheckpointOnEvent attribute) fill_missing() (sleap.instance.Instance method) filter_fn (sleap.nn.data.dataset_ops.LambdaFilter attribute) filter_increase (sleap.nn.architectures.hourglass.Hourglass attribute) filters (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) (sleap.nn.architectures.hourglass.DownsamplingBlock attribute) (sleap.nn.architectures.hourglass.Hourglass attribute) (sleap.nn.architectures.hourglass.StemBlock attribute) (sleap.nn.architectures.hourglass.UpsamplingBlock attribute) (sleap.nn.architectures.leap.LeapCNN attribute) (sleap.nn.architectures.unet.UNet attribute) (sleap.nn.config.model.HourglassConfig attribute) (sleap.nn.config.model.LEAPConfig attribute) (sleap.nn.config.model.UNetConfig attribute) (sleap.nn.config.model.UpsamplingConfig attribute) filters_increase (sleap.nn.config.model.HourglassConfig attribute) filters_rate (sleap.nn.architectures.leap.LeapCNN attribute) (sleap.nn.architectures.unet.UNet attribute) (sleap.nn.config.model.LEAPConfig attribute) (sleap.nn.config.model.UNetConfig attribute) (sleap.nn.config.model.UpsamplingConfig attribute) final_model (sleap.nn.config.outputs.CheckpointingConfig attribute) final_pass() (sleap.nn.tracking.Tracker method) find() (sleap.instance.LabeledFrame method) (sleap.io.dataset.Labels method) find_changed_subpath() (in module sleap.io.pathutils) find_fancy_frame_idxs() (sleap.io.dataset.LabelsDataCache method) find_files_by_suffix() (in module sleap.util) find_first() (sleap.io.dataset.Labels method) find_frame_pairs() (in module sleap.nn.evals) find_frames() (sleap.io.dataset.LabelsDataCache method) find_global_peaks() (in module sleap.nn.peak_finding) find_global_peaks_integral() (in module sleap.nn.peak_finding) find_global_peaks_rough() (in module sleap.nn.peak_finding) find_global_peaks_with_offsets() (in module sleap.nn.peak_finding) find_head() (in module sleap.nn.inference) find_instance_crop_size() (in module sleap.nn.data.instance_cropping) find_last() (sleap.io.dataset.Labels method) find_local_peaks() (in module sleap.nn.peak_finding) find_local_peaks_integral() (in module sleap.nn.peak_finding) find_local_peaks_rough() (in module sleap.nn.peak_finding) find_local_peaks_with_offsets() (in module sleap.nn.peak_finding) find_neighbors() (sleap.skeleton.Skeleton method) find_node() (sleap.skeleton.Skeleton method) find_offsets_local_direction() (in module sleap.nn.peak_finding) find_padding_for_stride() (in module sleap.nn.data.resizing) find_path_using_paths() (in module sleap.io.dataset) find_peaks() (sleap.nn.inference.BottomUpInferenceLayer method) (sleap.nn.inference.BottomUpMultiClassInferenceLayer method) find_points_bbox_midpoint() (in module sleap.nn.data.instance_centroids) find_suggestion() (sleap.io.dataset.Labels method) find_track_occupancy() (sleap.io.dataset.Labels method) find_unique_nodes() (sleap.skeleton.Skeleton static method) FindInstancePeaks (class in sleap.nn.inference) FindInstancePeaksGroundTruth (class in sleap.nn.inference) finish_complex_merge() (sleap.io.dataset.Labels static method) first_choice_matching() (in module sleap.nn.tracker.components) first_conv_stride (sleap.nn.architectures.hourglass.StemBlock attribute) fit_tracks() (in module sleap.info.trackcleaner) fixup_path() (sleap.io.video.Video static method) flatten() (sleap.info.feature_suggestions.ItemStack method) flatten_channels (sleap.nn.data.edge_maps.PartAffinityFieldsGenerator attribute) flatten_offsets (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.SingleInstanceConfidenceMapGenerator attribute) flip_horizontal (sleap.nn.config.optimization.AugmentationConfig attribute) flip_instances_lr() (in module sleap.nn.data.augmentation) flip_instances_ud() (in module sleap.nn.data.augmentation) flow_shift_instances() (sleap.nn.tracking.FlowCandidateMaker static method) FlowCandidateMaker (class in sleap.nn.tracking) FlowMaxTracker (class in sleap.nn.tracking) FlowMaxTracksCandidateMaker (class in sleap.nn.tracking) FlowTracker (class in sleap.nn.tracking) format_id (sleap.io.format.filehandle.FileHandle property) formatted_ext_options (sleap.io.format.adaptor.Adaptor property) (sleap.io.format.alphatracker.AlphaTrackerAdaptor property) forward_pass() (sleap.nn.inference.BottomUpInferenceLayer method) (sleap.nn.inference.BottomUpMultiClassInferenceLayer method) fps (sleap.io.video.MediaVideo property) (sleap.io.videowriter.VideoWriterSkvideo attribute) frame_idx (sleap.instance.Instance property) frame_list() (in module sleap.util) FrameGroupSet (class in sleap.info.feature_suggestions) FrameItem (class in sleap.info.feature_suggestions) FrameMatches (class in sleap.nn.tracker.components) frames (sleap.io.video.HDF5Video property) (sleap.io.video.ImgStoreVideo property) (sleap.io.video.MediaVideo property) (sleap.io.video.NumpyVideo property) (sleap.io.video.SingleImageVideo property) frames() (sleap.io.dataset.Labels method) from_array() (sleap.instance.PointArray class method) from_arrays() (sleap.instance.PredictedInstance class method) from_blocks() (sleap.nn.data.pipelines.Pipeline class method) from_candidate_instances() (sleap.nn.tracker.components.FrameMatches class method) from_config() (sleap.nn.architectures.hourglass.Hourglass class method) (sleap.nn.architectures.leap.LeapCNN class method) (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder class method) (sleap.nn.architectures.resnet.ResNetv1 class method) (sleap.nn.architectures.unet.UNet class method) (sleap.nn.architectures.upsampling.UpsamplingStack class method) (sleap.nn.data.augmentation.ImgaugAugmenter class method) (sleap.nn.data.instance_centroids.InstanceCentroidFinder class method) (sleap.nn.data.instance_cropping.InstanceCropper class method) (sleap.nn.data.normalization.Normalizer class method) (sleap.nn.data.resizing.Resizer class method) (sleap.nn.data.resizing.SizeMatcher class method) (sleap.nn.heads.CenteredInstanceConfmapsHead class method) (sleap.nn.heads.CentroidConfmapsHead class method) (sleap.nn.heads.ClassMapsHead class method) (sleap.nn.heads.ClassVectorsHead class method) (sleap.nn.heads.MultiInstanceConfmapsHead class method) (sleap.nn.heads.OffsetRefinementHead class method) (sleap.nn.heads.PartAffinityFieldsHead class method) (sleap.nn.heads.SingleInstanceConfmapsHead class method) (sleap.nn.losses.OHKMLoss class method) (sleap.nn.model.Model class method) (sleap.nn.paf_grouping.PAFScorer class method) (sleap.nn.training.DataReaders class method) (sleap.nn.training.Trainer class method) from_dict() (sleap.skeleton.Skeleton class method) from_filename() (sleap.io.video.Video class method) (sleap.nn.data.providers.LabelsReader class method) from_filepath() (sleap.nn.data.providers.VideoReader class method) from_hdf5() (sleap.io.video.Video class method) from_image_filenames() (sleap.io.video.Video class method) from_instance() (sleap.instance.PredictedInstance class method) from_json() (sleap.nn.config.training_job.TrainingJobConfig class method) (sleap.skeleton.Skeleton class method) from_json_data() (sleap.io.format.labels_json.LabelsJsonAdaptor class method) from_json_dicts() (sleap.nn.config.training_job.TrainingJobConfig class method) from_labels() (sleap.nn.training.DataReaders class method) from_media() (sleap.io.video.Video class method) from_model_paths() (sleap.nn.inference.Predictor class method) from_names() (sleap.skeleton.Node static method) from_names_and_edge_inds() (sleap.skeleton.Skeleton class method) from_numpy() (sleap.instance.Instance class method) (sleap.instance.PredictedInstance class method) (sleap.io.video.Video class method) from_pipelines() (sleap.nn.data.pipelines.Pipeline class method) from_point() (sleap.instance.PredictedPoint class method) from_pointsarray() (sleap.instance.Instance class method) (sleap.instance.PredictedInstance class method) from_skeleton() (sleap.nn.data.augmentation.RandomFlipper class method) from_trained_models() (sleap.nn.inference.BottomUpMultiClassPredictor class method) (sleap.nn.inference.BottomUpPredictor class method) (sleap.nn.inference.MoveNetPredictor class method) (sleap.nn.inference.SingleInstancePredictor class method) (sleap.nn.inference.TopDownMultiClassPredictor class method) (sleap.nn.inference.TopDownPredictor class method) from_unlabeled_suggestions() (sleap.nn.data.providers.LabelsReader class method) from_user_instances() (sleap.nn.data.providers.LabelsReader class method) from_user_labeled_frames() (sleap.nn.data.providers.LabelsReader class method) from_video() (sleap.io.asyncvideo.AsyncVideo class method) frozen (sleap.nn.architectures.resnet.ResNet101 attribute) (sleap.nn.architectures.resnet.ResNet152 attribute) (sleap.nn.architectures.resnet.ResNet50 attribute) (sleap.nn.architectures.resnet.ResNetv1 attribute) full_image_key (sleap.nn.data.resizing.Resizer attribute) (sleap.nn.data.resizing.SizeMatcher attribute) func (sleap.nn.data.general.LambdaMap attribute) G gaussian_noise (sleap.nn.config.optimization.AugmentationConfig attribute) gaussian_noise_mean (sleap.nn.config.optimization.AugmentationConfig attribute) gaussian_noise_stddev (sleap.nn.config.optimization.AugmentationConfig attribute) gaussian_pdf() (in module sleap.nn.data.utils) generate_skeleton_preview_image() (in module sleap.nn.viz) GenericJsonAdaptor (class in sleap.io.format.genericjson) get() (sleap.info.feature_suggestions.ParallelFeaturePipeline method) (sleap.io.dataset.Labels method) get_all_gpus() (in module sleap.nn.system) get_all_items_from_group() (sleap.info.feature_suggestions.ItemStack method) get_alpha_tracker_frame_dict() (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) get_alpha_tracker_instance_dict() (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) get_alpha_tracker_point_dict() (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) get_available_gpus() (in module sleap.nn.system) get_config_file() (in module sleap.util) get_connection_candidates() (in module sleap.nn.paf_grouping) get_current_gpu() (in module sleap.nn.system) get_edge_points() (in module sleap.nn.data.edge_maps) get_edges_as_np_strings() (in module sleap.info.write_tracking_h5) get_filtered_frame_idxs() (sleap.io.dataset.LabelsDataCache method) get_frame() (sleap.io.video.HDF5Video method) (sleap.io.video.ImgStoreVideo method) (sleap.io.video.MediaVideo method) (sleap.io.video.NumpyVideo method) (sleap.io.video.SingleImageVideo method) (sleap.io.video.Video method) get_frame_count() (sleap.io.dataset.LabelsDataCache method) get_frames() (sleap.io.video.Video method) get_frames_safely() (sleap.io.video.Video method) get_gpu_memory() (in module sleap.nn.system) get_instance_anchors() (in module sleap.nn.data.instance_centroids) get_instance_score_series() (sleap.info.summary.StatisticSeries method) get_instances_points() (in module sleap.info.align) get_item_data() (sleap.info.feature_suggestions.ItemStack method) get_item_data_idxs() (sleap.info.feature_suggestions.ItemStack method) get_item_group() (sleap.info.feature_suggestions.FrameGroupSet method) get_keras_model_path() (in module sleap.nn.inference) get_mean_and_std_for_points() (in module sleap.info.align) get_model_output_stride() (in module sleap.nn.inference) get_most_stable_node_pair() (in module sleap.info.align) get_next_suggestion() (sleap.io.dataset.Labels method) get_nodes_as_np_strings() (in module sleap.info.write_tracking_h5) get_occupancy_and_points_matrices() (in module sleap.info.write_tracking_h5) get_package_file() (in module sleap.util) get_paf_lines() (in module sleap.nn.paf_grouping) get_point_count_series() (sleap.info.summary.StatisticSeries method) get_point_displacement_series() (sleap.info.summary.StatisticSeries method) get_point_score_series() (sleap.info.summary.StatisticSeries method) get_points_array() (sleap.instance.Instance method) get_primary_point_displacement_series() (sleap.info.summary.StatisticSeries method) get_raw_images() (sleap.info.feature_suggestions.ItemStack method) get_ref_instances() (sleap.nn.tracking.FlowMaxTracksCandidateMaker static method) get_shifted_instances() (sleap.nn.tracking.FlowCandidateMaker method) get_shifted_instances_from_earlier_time() (sleap.nn.tracking.FlowCandidateMaker method) get_stable_node_pairs() (in module sleap.info.align) get_suggestions() (sleap.io.dataset.Labels method) get_symmetry() (sleap.skeleton.Skeleton method) get_symmetry_name() (sleap.skeleton.Skeleton method) get_template_points_array() (in module sleap.info.align) get_timestamp() (in module sleap.nn.training) get_track_count() (sleap.io.dataset.Labels method) get_track_instance_matches() (in module sleap.nn.tracker.kalman) get_track_occupancy() (sleap.io.dataset.Labels method) (sleap.io.dataset.LabelsDataCache method) get_tracks_as_np_strings() (in module sleap.info.write_tracking_h5) get_unlabeled_suggestion_inds() (sleap.io.dataset.Labels method) get_video_suggestions() (sleap.io.dataset.Labels method) get_video_track_occupancy() (sleap.io.dataset.LabelsDataCache method) GlobalPeakFinder (class in sleap.nn.data.inference) graph (sleap.skeleton.Skeleton property) graph_symmetry (sleap.skeleton.Skeleton property) greedy_matching() (in module sleap.nn.tracker.components) group_array() (in module sleap.nn.utils) group_class_peaks() (in module sleap.nn.identity) group_data (sleap.info.feature_suggestions.FrameGroupSet attribute) group_examples() (in module sleap.nn.data.grouping) group_examples_iter() (in module sleap.nn.data.grouping) group_instances() (sleap.nn.paf_grouping.PAFScorer method) group_instances_batch() (in module sleap.nn.paf_grouping) group_instances_sample() (in module sleap.nn.paf_grouping) group_sets (sleap.info.feature_suggestions.ItemStack attribute) groups (sleap.info.feature_suggestions.FrameGroupSet property) groupset_data (sleap.info.feature_suggestions.FrameGroupSet attribute) H handles (sleap.io.format.adaptor.Adaptor property) (sleap.io.format.alphatracker.AlphaTrackerAdaptor property) (sleap.io.format.coco.LabelsCocoAdaptor property) (sleap.io.format.csv.CSVAdaptor property) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor property) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor property) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor property) (sleap.io.format.genericjson.GenericJsonAdaptor property) (sleap.io.format.hdf5.LabelsV1Adaptor property) (sleap.io.format.labels_json.LabelsJsonAdaptor property) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor property) (sleap.io.format.ndx_pose.NDXPoseAdaptor property) (sleap.io.format.nix.NixAdaptor property) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor property) (sleap.io.format.text.TextAdaptor property) hard_keypoint_mining (sleap.nn.config.optimization.OptimizationConfig attribute) hard_to_easy_ratio (sleap.nn.config.optimization.HardKeypointMiningConfig attribute) (sleap.nn.losses.OHKMLoss attribute) HardKeypointMiningConfig (class in sleap.nn.config.optimization) has_edge() (sleap.skeleton.Skeleton method) has_embedded_images (sleap.io.video.HDF5Video property) has_frame() (sleap.io.dataset.Labels method) has_missing_videos (sleap.io.dataset.Labels property) has_node() (sleap.skeleton.Skeleton method) has_nodes() (sleap.skeleton.Skeleton method) has_offsets (sleap.nn.training.BottomUpModelTrainer property) (sleap.nn.training.BottomUpMultiClassModelTrainer property) (sleap.nn.training.CentroidConfmapsModelTrainer property) (sleap.nn.training.SingleInstanceModelTrainer property) (sleap.nn.training.TopdownConfmapsModelTrainer property) (sleap.nn.training.TopDownMultiClassModelTrainer property) has_only_first_choice_matches (sleap.nn.tracker.components.FrameMatches property) has_predicted_instances (sleap.instance.LabeledFrame property) has_tracked_instances (sleap.instance.LabeledFrame property) has_user_instances (sleap.instance.LabeledFrame property) HDF5Video (class in sleap.io.video) Head (class in sleap.nn.heads) heads (sleap.nn.config.model.ModelConfig attribute) (sleap.nn.model.Model attribute) HeadsConfig (class in sleap.nn.config.model) height (sleap.io.video.HDF5Video property) (sleap.io.video.ImgStoreVideo property) (sleap.io.video.MediaVideo property) (sleap.io.video.NumpyVideo property) (sleap.io.video.SingleImageVideo property) (sleap.io.videowriter.VideoWriterSkvideo attribute) HigherHRNet (class in sleap.nn.architectures.hrnet) hog_bag_of_features() (sleap.info.feature_suggestions.ItemStack method) horizontal (sleap.nn.data.augmentation.RandomFlipper attribute) Hourglass (class in sleap.nn.architectures.hourglass) hourglass (sleap.nn.config.model.BackboneConfig attribute) HourglassConfig (class in sleap.nn.config.model) hungarian_matching() (in module sleap.nn.tracker.components) I image (sleap.instance.LabeledFrame property) image_key (sleap.nn.data.augmentation.ImgaugAugmenter attribute) (sleap.nn.data.instance_cropping.InstanceCropper attribute) (sleap.nn.data.normalization.Normalizer attribute) (sleap.nn.data.resizing.Resizer attribute) (sleap.nn.data.resizing.SizeMatcher attribute) imagenet_mode (sleap.nn.config.data.PreprocessingConfig attribute) (sleap.nn.data.normalization.Normalizer attribute) imagenet_preproc_v1() (in module sleap.nn.architectures.resnet) img_scale (sleap.nn.tracking.FlowCandidateMaker attribute) img_to_cv() (in module sleap.io.visuals) ImgaugAugmenter (class in sleap.nn.data.augmentation) imgfig() (in module sleap.nn.viz) imgstore (sleap.io.video.ImgStoreVideo property) imgstore_from_filenames() (sleap.io.video.Video class method) ImgStoreVideo (class in sleap.io.video) index() (sleap.instance.LabeledFrame method) (sleap.io.dataset.Labels method) inference_layer (sleap.nn.inference.BottomUpMultiClassInferenceModel attribute) (sleap.nn.inference.MoveNetInferenceModel attribute) inference_model (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.inference.MoveNetPredictor attribute) (sleap.nn.inference.SingleInstancePredictor attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) InferenceLayer (class in sleap.nn.inference) InferenceModel (class in sleap.nn.inference) initial_config (sleap.nn.training.Trainer attribute) initial_downsampling_steps (sleap.nn.architectures.hrnet.HigherHRNet attribute) initial_learning_rate (sleap.nn.config.optimization.OptimizationConfig attribute) initial_model (sleap.nn.config.outputs.CheckpointingConfig attribute) initialize_devices() (in module sleap.nn.system) input_key_names (sleap.nn.data.general.LambdaMap attribute) input_keys (sleap.nn.data.augmentation.ImgaugAugmenter property) (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator property) (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator property) (sleap.nn.data.confidence_maps.SingleInstanceConfidenceMapGenerator property) (sleap.nn.data.dataset_ops.Batcher property) (sleap.nn.data.dataset_ops.LambdaFilter property) (sleap.nn.data.dataset_ops.Prefetcher property) (sleap.nn.data.dataset_ops.Preloader property) (sleap.nn.data.dataset_ops.Repeater property) (sleap.nn.data.dataset_ops.Shuffler property) (sleap.nn.data.dataset_ops.Unbatcher property) (sleap.nn.data.edge_maps.PartAffinityFieldsGenerator property) (sleap.nn.data.general.KeyDeviceMover property) (sleap.nn.data.general.KeyFilter property) (sleap.nn.data.general.KeyRenamer property) (sleap.nn.data.general.LambdaMap property) (sleap.nn.data.identity.ClassMapGenerator property) (sleap.nn.data.identity.ClassVectorGenerator property) (sleap.nn.data.inference.PredictedCenterInstanceNormalizer property) (sleap.nn.data.instance_centroids.InstanceCentroidFinder property) (sleap.nn.data.instance_cropping.InstanceCropper property) (sleap.nn.data.normalization.Normalizer property) (sleap.nn.data.resizing.PointsRescaler property) (sleap.nn.data.resizing.Resizer property) (sleap.nn.data.resizing.SizeMatcher property) (sleap.nn.data.training.KeyMapper property) (sleap.nn.training.BottomUpModelTrainer property) (sleap.nn.training.BottomUpMultiClassModelTrainer property) (sleap.nn.training.CentroidConfmapsModelTrainer property) (sleap.nn.training.SingleInstanceModelTrainer property) (sleap.nn.training.TopdownConfmapsModelTrainer property) (sleap.nn.training.TopDownMultiClassModelTrainer property) (sleap.nn.training.Trainer property) input_scale (sleap.nn.config.data.PreprocessingConfig attribute) (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.InferenceLayer attribute) (sleap.nn.inference.MoveNetInferenceLayer attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) insert() (sleap.instance.LabeledFrame method) (sleap.io.dataset.Labels method) Instance (class in sleap.instance) instance_confmap_head (sleap.nn.data.pipelines.TopdownConfmapsPipeline attribute) instance_count (sleap.nn.tracking.TrackCleaner attribute) instance_count() (sleap.io.dataset.Labels method) instance_iou() (in module sleap.nn.tracker.components) instance_peaks (sleap.nn.inference.TopDownInferenceModel attribute) (sleap.nn.inference.TopDownMultiClassInferenceModel attribute) instance_similarity() (in module sleap.nn.tracker.components) InstanceCentroidFinder (class in sleap.nn.data.instance_centroids) InstanceConfidenceMapGenerator (class in sleap.nn.data.confidence_maps) InstanceCropper (class in sleap.nn.data.instance_cropping) InstanceCroppingConfig (class in sleap.nn.config.data) instances (sleap.instance.LabeledFrame property) instances() (sleap.io.dataset.Labels method) instances_key (sleap.nn.data.augmentation.ImgaugAugmenter attribute) (sleap.nn.data.instance_centroids.InstanceCentroidFinder attribute) (sleap.nn.data.instance_cropping.InstanceCropper attribute) instances_to_show (sleap.instance.LabeledFrame property) integral_patch_size (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.SingleInstancePredictor attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) integral_refinement (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.inference.SingleInstancePredictor attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) integral_regression() (in module sleap.nn.peak_finding) IntermediateFeature (class in sleap.nn.architectures.common) interp_method (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) (sleap.nn.architectures.hourglass.Hourglass attribute) (sleap.nn.architectures.hourglass.UpsamplingBlock attribute) iou_threshold (sleap.nn.tracking.TrackCleaner attribute) is_arborescence (sleap.skeleton.Skeleton property) is_from_multi_size_videos (sleap.nn.data.providers.LabelsReader property) is_gpu_system() (in module sleap.nn.system) is_grayscale (sleap.nn.inference.BottomUpMultiClassPredictor property) (sleap.nn.inference.BottomUpPredictor property) (sleap.nn.inference.MoveNetPredictor property) (sleap.nn.inference.Predictor property) (sleap.nn.inference.SingleInstancePredictor property) (sleap.nn.inference.TopDownMultiClassPredictor property) (sleap.nn.inference.TopDownPredictor property) is_hdf5 (sleap.io.format.filehandle.FileHandle property) is_initialized() (in module sleap.nn.system) is_json (sleap.io.format.filehandle.FileHandle property) is_missing (sleap.io.video.NumpyVideo property) (sleap.io.video.Video property) is_multi_instance (sleap.io.dataset.Labels property) is_template (sleap.skeleton.Skeleton property) is_valid (sleap.nn.tracking.KalmanTracker property) isnan() (sleap.instance.Point method) item_group (sleap.info.feature_suggestions.FrameGroupSet attribute) items (sleap.info.feature_suggestions.ItemStack attribute) ItemStack (class in sleap.info.feature_suggestions) J json (sleap.io.format.filehandle.FileHandle property) json_dumps() (in module sleap.util) json_loads() (in module sleap.util) K KalmanTracker (class in sleap.nn.tracking) keep_full_image (sleap.nn.data.instance_cropping.InstanceCropper attribute) (sleap.nn.data.resizing.Resizer attribute) (sleap.nn.data.resizing.SizeMatcher attribute) keras_model (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.InferenceLayer attribute) (sleap.nn.inference.MoveNetInferenceLayer attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) (sleap.nn.model.Model attribute) (sleap.nn.training.Trainer property) KerasModelPredictor (class in sleap.nn.data.inference) kernel_size (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) (sleap.nn.architectures.unet.UNet attribute) key_maps (sleap.nn.data.training.KeyMapper attribute) KeyDeviceMover (class in sleap.nn.data.general) KeyFilter (class in sleap.nn.data.general) KeyMapper (class in sleap.nn.data.training) KeyRenamer (class in sleap.nn.data.general) kmeans() (sleap.info.feature_suggestions.ItemStack method) L labeled_frames (sleap.io.dataset.Labels attribute) LabeledFrame (class in sleap.instance) Labels (class in sleap.io.dataset) labels (sleap.io.dataset.Labels property) (sleap.nn.data.providers.LabelsReader attribute) LabelsCocoAdaptor (class in sleap.io.format.coco) LabelsConfig (class in sleap.nn.config.data) LabelsDataCache (class in sleap.io.dataset) LabelsDeepLabCutCsvAdaptor (class in sleap.io.format.deeplabcut) LabelsDeepLabCutYamlAdaptor (class in sleap.io.format.deeplabcut) LabelsDeepPoseKitAdaptor (class in sleap.io.format.deepposekit) LabelsJsonAdaptor (class in sleap.io.format.labels_json) LabelsLeapMatlabAdaptor (class in sleap.io.format.leap_matlab) LabelsReader (class in sleap.nn.data.providers) LabelsV1Adaptor (class in sleap.io.format.hdf5) LambdaFilter (class in sleap.nn.data.dataset_ops) LambdaMap (class in sleap.nn.data.general) last_frame_idx (sleap.io.video.HDF5Video property) (sleap.io.video.ImgStoreVideo property) (sleap.io.video.Video property) latest_model (sleap.nn.config.outputs.CheckpointingConfig attribute) leap (sleap.nn.config.model.BackboneConfig attribute) LeapCNN (class in sleap.nn.architectures.leap) LEAPConfig (class in sleap.nn.config.model) learning_rate_schedule (sleap.nn.config.optimization.OptimizationConfig attribute) LearningRateScheduleConfig (class in sleap.nn.config.optimization) list_file_missing() (in module sleap.io.pathutils) list_points_array() (in module sleap.info.metrics) load_all_hdf5() (sleap.skeleton.Skeleton class method) load_by_chunk() (sleap.io.asyncvideo.AsyncVideo method) load_config() (in module sleap.nn.config.training_job) load_file() (in module sleap.io.dataset) (sleap.io.dataset.Labels class method) load_hdf5() (sleap.skeleton.Skeleton class method) load_json() (sleap.nn.config.training_job.TrainingJobConfig class method) (sleap.skeleton.Skeleton class method) load_labels_json_old() (in module sleap.io.legacy) load_mat() (sleap.skeleton.Skeleton class method) load_metrics() (in module sleap.nn.evals) load_model() (in module sleap.nn.inference) load_predicted_labels_json_old() (in module sleap.io.legacy) load_video() (in module sleap.io.video) LocalPeakFinder (class in sleap.nn.data.inference) log_to_csv (sleap.nn.config.outputs.OutputsConfig attribute) logdir (sleap.nn.callbacks.TensorBoardMatplotlibWriter attribute) loss_frequency (sleap.nn.config.outputs.TensorBoardConfig attribute) loss_function (sleap.nn.heads.ClassVectorsHead property) (sleap.nn.heads.Head property) loss_scale (sleap.nn.config.optimization.HardKeypointMiningConfig attribute) (sleap.nn.losses.OHKMLoss attribute) loss_weight (sleap.nn.config.model.CenteredInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.CentroidsHeadConfig attribute) (sleap.nn.config.model.ClassMapsHeadConfig attribute) (sleap.nn.config.model.ClassVectorsHeadConfig attribute) (sleap.nn.config.model.MultiInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.PartAffinityFieldsHeadConfig attribute) (sleap.nn.config.model.SingleInstanceConfmapsHeadConfig attribute) (sleap.nn.heads.CenteredInstanceConfmapsHead attribute) (sleap.nn.heads.CentroidConfmapsHead attribute) (sleap.nn.heads.ClassMapsHead attribute) (sleap.nn.heads.ClassVectorsHead attribute) (sleap.nn.heads.MultiInstanceConfmapsHead attribute) (sleap.nn.heads.OffsetRefinementHead attribute), [1] (sleap.nn.heads.PartAffinityFieldsHead attribute) (sleap.nn.heads.SingleInstanceConfmapsHead attribute) M main() (in module sleap.info.write_tracking_h5) (in module sleap.io.convert) (in module sleap.nn.inference) (in module sleap.nn.training) make() (sleap.info.feature_suggestions.ParallelFeaturePipeline class method) make_backbone() (sleap.nn.architectures.encoder_decoder.EncoderDecoder method) (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder method) (sleap.nn.architectures.resnet.ResNetv1 method) make_backbone_fn() (in module sleap.nn.architectures.resnet) make_base_pipeline() (sleap.nn.data.pipelines.BottomUpMultiClassPipeline method) (sleap.nn.data.pipelines.BottomUpPipeline method) (sleap.nn.data.pipelines.CentroidConfmapsPipeline method) (sleap.nn.data.pipelines.SingleInstanceConfmapsPipeline method) (sleap.nn.data.pipelines.TopdownConfmapsPipeline method) (sleap.nn.data.pipelines.TopDownMultiClassPipeline method) make_block() (sleap.nn.architectures.encoder_decoder.DecoderBlock method) (sleap.nn.architectures.encoder_decoder.EncoderBlock method) (sleap.nn.architectures.encoder_decoder.SimpleConvBlock method) (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock method) (sleap.nn.architectures.hourglass.DownsamplingBlock method) (sleap.nn.architectures.hourglass.StemBlock method) (sleap.nn.architectures.hourglass.UpsamplingBlock method) (sleap.nn.architectures.unet.PoolingBlock method) make_cattr() (sleap.skeleton.Skeleton static method) make_centered_bboxes() (in module sleap.nn.data.instance_cropping) make_class_maps() (in module sleap.nn.data.identity) make_class_vectors() (in module sleap.nn.data.identity) make_confmaps() (in module sleap.nn.data.confidence_maps) make_dataset() (sleap.nn.data.pipelines.Pipeline method) (sleap.nn.data.providers.LabelsReader method) (sleap.nn.data.providers.VideoReader method) make_decoder() (sleap.nn.architectures.encoder_decoder.EncoderDecoder method) make_default() (sleap.instance.PointArray class method) make_edge_maps() (in module sleap.nn.data.edge_maps) make_encoder() (sleap.nn.architectures.encoder_decoder.EncoderDecoder method) make_gaussian_kernel() (in module sleap.nn.peak_finding) make_grid_vectors() (in module sleap.nn.data.utils) make_head() (sleap.nn.heads.ClassVectorsHead method) (sleap.nn.heads.Head method) make_instance_cattr() (in module sleap.instance) make_line_subs() (in module sleap.nn.paf_grouping) make_model() (sleap.nn.model.Model method) make_model_movenet() (in module sleap.nn.inference) make_multi_confmaps() (in module sleap.nn.data.confidence_maps) make_multi_confmaps_with_offsets() (in module sleap.nn.data.confidence_maps) make_multi_pafs() (in module sleap.nn.data.edge_maps) make_offsets() (in module sleap.nn.data.offset_regression) make_pafs() (in module sleap.nn.data.edge_maps) make_pipeline() (sleap.nn.inference.Predictor method) (sleap.nn.inference.TopDownMultiClassPredictor method) (sleap.nn.inference.TopDownPredictor method) (sleap.nn.inference.VisualPredictor method) make_predicted_instances() (in module sleap.nn.paf_grouping) make_resnet_model() (in module sleap.nn.architectures.resnet) make_sample_group() (sleap.info.feature_suggestions.ItemStack method) make_scoped_dictionary() (in module sleap.util) make_skip_connection (sleap.nn.architectures.upsampling.UpsamplingStack attribute) make_stack() (sleap.nn.architectures.upsampling.UpsamplingStack method) make_stem() (sleap.nn.architectures.encoder_decoder.EncoderDecoder method) make_tracker() (sleap.nn.tracking.KalmanTracker class method) make_training_pipeline() (sleap.nn.data.pipelines.BottomUpMultiClassPipeline method) (sleap.nn.data.pipelines.BottomUpPipeline method) (sleap.nn.data.pipelines.CentroidConfmapsPipeline method) (sleap.nn.data.pipelines.SingleInstanceConfmapsPipeline method) (sleap.nn.data.pipelines.TopdownConfmapsPipeline method) (sleap.nn.data.pipelines.TopDownMultiClassPipeline method) make_video_callback() (sleap.io.dataset.Labels class method) make_video_for_image_list() (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor class method) make_viz_pipeline() (sleap.nn.data.pipelines.BottomUpMultiClassPipeline method) (sleap.nn.data.pipelines.BottomUpPipeline method) (sleap.nn.data.pipelines.CentroidConfmapsPipeline method) (sleap.nn.data.pipelines.SingleInstanceConfmapsPipeline method) (sleap.nn.data.pipelines.TopdownConfmapsPipeline method) (sleap.nn.data.pipelines.TopDownMultiClassPipeline method) mask_offsets() (in module sleap.nn.data.offset_regression) Match (class in sleap.nn.tracker.components) match_candidates() (sleap.nn.paf_grouping.PAFScorer method) match_candidates_batch() (in module sleap.nn.paf_grouping) match_candidates_sample() (in module sleap.nn.paf_grouping) match_dict_from_match_function() (in module sleap.nn.tracker.kalman) match_frame_pairs() (in module sleap.nn.evals) match_instance_lists() (in module sleap.info.metrics) match_instance_lists_nodewise() (in module sleap.info.metrics) match_instances() (in module sleap.nn.evals) match_points() (in module sleap.nn.utils) matched_instance_distances() (in module sleap.info.metrics) matches (sleap.nn.tracker.components.FrameMatches attribute) matches() (sleap.instance.Instance method) (sleap.instance.Track method) (sleap.io.video.HDF5Video method) (sleap.io.video.ImgStoreVideo method) (sleap.io.video.MediaVideo method) (sleap.io.video.NumpyVideo method) (sleap.io.video.SingleImageVideo method) (sleap.skeleton.Node method) (sleap.skeleton.Skeleton method) matching_function (sleap.nn.tracking.Tracker attribute) matching_function() (sleap.nn.tracking.FlowMaxTracker method) MatplotlibSaver (class in sleap.nn.callbacks) max_edge_length_ratio (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.paf_grouping.PAFScorer attribute) max_hard_keypoints (sleap.nn.config.optimization.HardKeypointMiningConfig attribute) (sleap.nn.losses.OHKMLoss attribute) max_height_and_width (sleap.nn.data.providers.LabelsReader property) (sleap.nn.data.providers.VideoReader property) max_image_height (sleap.nn.data.resizing.SizeMatcher attribute) max_image_width (sleap.nn.data.resizing.SizeMatcher attribute) max_instances (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.TopDownPredictor attribute) max_stride (sleap.nn.config.model.HourglassConfig attribute) (sleap.nn.config.model.LEAPConfig attribute) (sleap.nn.config.model.ResNetConfig attribute) (sleap.nn.config.model.UNetConfig attribute) max_tracking (sleap.nn.tracking.Tracker attribute) max_tracks (sleap.nn.tracking.FlowMaxTracksCandidateMaker attribute) maximum_stride (sleap.nn.architectures.encoder_decoder.EncoderDecoder property) (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder property) (sleap.nn.architectures.resnet.ResNetv1 property) (sleap.nn.model.Model property) MediaVideo (class in sleap.io.video) merge_container_dicts() (sleap.io.dataset.Labels static method) merge_frames() (sleap.instance.LabeledFrame static method) merge_matching_frames() (sleap.io.dataset.Labels method) merge_nodes() (sleap.io.dataset.Labels method) meta (sleap.info.feature_suggestions.ItemStack attribute) method (sleap.info.feature_suggestions.FrameGroupSet attribute) (sleap.nn.config.model.UpsamplingConfig attribute) middle_block (sleap.nn.architectures.unet.UNet attribute) (sleap.nn.config.model.UNetConfig attribute) midpoint (sleap.instance.Instance property) min_batches_per_epoch (sleap.nn.config.optimization.OptimizationConfig attribute) min_hard_keypoints (sleap.nn.config.optimization.HardKeypointMiningConfig attribute) (sleap.nn.losses.OHKMLoss attribute) min_instance_peaks (sleap.nn.paf_grouping.PAFScorer attribute) min_learning_rate (sleap.nn.config.optimization.LearningRateScheduleConfig attribute) min_line_scores (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.paf_grouping.PAFScorer attribute) min_new_track_points (sleap.nn.tracking.Tracker attribute) min_points (sleap.nn.tracking.FlowCandidateMaker attribute) min_val_batches_per_epoch (sleap.nn.config.optimization.OptimizationConfig attribute) mock_centroid_confidence (sleap.nn.data.instance_cropping.InstanceCropper attribute) MockGlobalPeakFinder (class in sleap.nn.data.inference) Model (class in sleap.nn.model) model (sleap.nn.config.training_job.TrainingJobConfig attribute) (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.training.Trainer attribute) model_name (sleap.nn.architectures.resnet.ResNetv1 attribute) (sleap.nn.inference.MoveNetInferenceLayer attribute) (sleap.nn.inference.MoveNetPredictor attribute) ModelCheckpointOnEvent (class in sleap.nn.callbacks) ModelConfig (class in sleap.nn.config.model) module sleap.info.align sleap.info.feature_suggestions sleap.info.labels sleap.info.metrics sleap.info.summary sleap.info.trackcleaner sleap.info.write_tracking_h5 sleap.instance sleap.io.asyncvideo sleap.io.convert sleap.io.dataset sleap.io.format.adaptor sleap.io.format.alphatracker sleap.io.format.coco sleap.io.format.csv sleap.io.format.deeplabcut sleap.io.format.deepposekit sleap.io.format.dispatch sleap.io.format.filehandle sleap.io.format.genericjson sleap.io.format.hdf5 sleap.io.format.labels_json sleap.io.format.leap_matlab sleap.io.format.main sleap.io.format.ndx_pose sleap.io.format.nix sleap.io.format.sleap_analysis sleap.io.format.text sleap.io.legacy sleap.io.pathutils sleap.io.video sleap.io.videowriter sleap.io.visuals sleap.message sleap.nn.architectures.common sleap.nn.architectures.encoder_decoder sleap.nn.architectures.hourglass sleap.nn.architectures.hrnet sleap.nn.architectures.leap sleap.nn.architectures.pretrained_encoders sleap.nn.architectures.resnet sleap.nn.architectures.unet sleap.nn.architectures.upsampling sleap.nn.callbacks sleap.nn.config.data sleap.nn.config.model sleap.nn.config.optimization sleap.nn.config.outputs sleap.nn.config.training_job sleap.nn.config.utils sleap.nn.data.augmentation sleap.nn.data.confidence_maps sleap.nn.data.dataset_ops sleap.nn.data.edge_maps sleap.nn.data.general sleap.nn.data.grouping sleap.nn.data.identity sleap.nn.data.inference sleap.nn.data.instance_centroids sleap.nn.data.instance_cropping sleap.nn.data.normalization sleap.nn.data.offset_regression sleap.nn.data.pipelines sleap.nn.data.providers sleap.nn.data.resizing sleap.nn.data.training sleap.nn.data.utils sleap.nn.evals sleap.nn.heads sleap.nn.identity sleap.nn.inference sleap.nn.losses sleap.nn.model sleap.nn.paf_grouping sleap.nn.peak_finding sleap.nn.system sleap.nn.tracker.components sleap.nn.tracker.kalman sleap.nn.tracking sleap.nn.training sleap.nn.utils sleap.nn.viz sleap.skeleton sleap.util MoveNetInferenceLayer (class in sleap.nn.inference) MoveNetInferenceModel (class in sleap.nn.inference) MoveNetPredictor (class in sleap.nn.inference) multi_class_bottomup (sleap.nn.config.model.HeadsConfig attribute) multi_class_topdown (sleap.nn.config.model.HeadsConfig attribute) multi_instance (sleap.nn.config.model.HeadsConfig attribute) MultiClassBottomUpConfig (class in sleap.nn.config.model) MultiClassTopDownConfig (class in sleap.nn.config.model) MultiConfidenceMapGenerator (class in sleap.nn.data.confidence_maps) MultiInstanceConfig (class in sleap.nn.config.model) MultiInstanceConfmapsHead (class in sleap.nn.heads) MultiInstanceConfmapsHeadConfig (class in sleap.nn.config.model) N n_deconv_modules (sleap.nn.architectures.hrnet.HigherHRNet attribute) n_edges (sleap.nn.paf_grouping.PAFScorer attribute) n_nodes (sleap.nn.paf_grouping.PAFScorer attribute) n_points (sleap.nn.paf_grouping.PAFScorer attribute) n_predicted_instances (sleap.instance.LabeledFrame property) n_tracked_instances (sleap.instance.LabeledFrame property) n_user_instances (sleap.instance.LabeledFrame property) n_visible_points (sleap.instance.Instance property) name (sleap.io.format.adaptor.Adaptor property) (sleap.io.format.alphatracker.AlphaTrackerAdaptor property) (sleap.io.format.coco.LabelsCocoAdaptor property) (sleap.io.format.csv.CSVAdaptor property) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor property) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor property) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor property) (sleap.io.format.genericjson.GenericJsonAdaptor property) (sleap.io.format.hdf5.LabelsV1Adaptor property) (sleap.io.format.labels_json.LabelsJsonAdaptor property) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor property) (sleap.io.format.ndx_pose.NDXPoseAdaptor property) (sleap.io.format.nix.NixAdaptor property) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor property) (sleap.io.format.text.TextAdaptor property) (sleap.nn.config.training_job.TrainingJobConfig attribute) (sleap.nn.losses.PartLoss attribute) (sleap.skeleton.Node attribute) (sleap.skeleton.Skeleton property) NDXPoseAdaptor (class in sleap.io.format.ndx_pose) negative_anchors (sleap.io.dataset.Labels attribute) NixAdaptor (class in sleap.io.format.nix) nms_fast() (in module sleap.nn.tracker.components) Node (class in sleap.skeleton) node_ind (sleap.nn.paf_grouping.PeakID attribute) node_names (sleap.skeleton.Skeleton property) node_to_index() (sleap.skeleton.Skeleton method) nodeless_point_dist() (in module sleap.info.metrics) nodes (sleap.instance.Instance property) (sleap.skeleton.Skeleton property) nodes_points (sleap.instance.Instance property) normalize_bboxes() (in module sleap.nn.data.instance_cropping) Normalizer (class in sleap.nn.data.normalization) num_convs (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) num_fc_layers (sleap.nn.config.model.ClassVectorsHeadConfig attribute) (sleap.nn.heads.ClassVectorsHead attribute) num_fc_units (sleap.nn.config.model.ClassVectorsHeadConfig attribute) (sleap.nn.heads.ClassVectorsHead attribute) num_frames (sleap.io.video.Video property) numpy() (sleap.instance.Instance method) (sleap.instance.LabeledFrame method) (sleap.instance.Point method) (sleap.io.dataset.Labels method) NumpyVideo (class in sleap.io.video) O of_max_levels (sleap.nn.tracking.FlowCandidateMaker attribute) of_window_size (sleap.nn.tracking.FlowCandidateMaker attribute) offset_refinement (sleap.nn.config.model.CenteredInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.CentroidsHeadConfig attribute) (sleap.nn.config.model.MultiInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.SingleInstanceConfmapsHeadConfig attribute) OffsetRefinementHead (class in sleap.nn.heads) offsets_head (sleap.nn.data.pipelines.BottomUpMultiClassPipeline attribute) (sleap.nn.data.pipelines.BottomUpPipeline attribute) (sleap.nn.data.pipelines.CentroidConfmapsPipeline attribute) (sleap.nn.data.pipelines.SingleInstanceConfmapsPipeline attribute) (sleap.nn.data.pipelines.TopdownConfmapsPipeline attribute) (sleap.nn.data.pipelines.TopDownMultiClassPipeline attribute) offsets_ind (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) offsets_threshold (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.SingleInstanceConfidenceMapGenerator attribute) OHKMLoss (class in sleap.nn.losses) on_batch_begin() (sleap.nn.callbacks.ProgressReporterZMQ method) on_batch_end() (sleap.nn.callbacks.ProgressReporterZMQ method) (sleap.nn.callbacks.TrainingControllerZMQ method) on_epoch_begin() (sleap.nn.callbacks.ProgressReporterZMQ method) on_epoch_end() (sleap.nn.callbacks.MatplotlibSaver method) (sleap.nn.callbacks.ModelCheckpointOnEvent method) (sleap.nn.callbacks.ProgressReporterZMQ method) (sleap.nn.callbacks.TensorBoardMatplotlibWriter method) on_train_begin() (sleap.nn.callbacks.ModelCheckpointOnEvent method) (sleap.nn.callbacks.ProgressReporterZMQ method) on_train_end() (sleap.nn.callbacks.ModelCheckpointOnEvent method) (sleap.nn.callbacks.ProgressReporterZMQ method) oneof() (in module sleap.nn.config.utils) online_mining (sleap.nn.config.optimization.HardKeypointMiningConfig attribute) online_shuffling (sleap.nn.config.optimization.OptimizationConfig attribute) open() (sleap.io.format.filehandle.FileHandle method) (sleap.io.video.ImgStoreVideo method) optimal_grouping (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) optimization (sleap.nn.config.training_job.TrainingJobConfig attribute) optimization_callbacks (sleap.nn.training.Trainer attribute) optimization_config (sleap.nn.data.pipelines.BottomUpMultiClassPipeline attribute) (sleap.nn.data.pipelines.BottomUpPipeline attribute) (sleap.nn.data.pipelines.CentroidConfmapsPipeline attribute) (sleap.nn.data.pipelines.SingleInstanceConfmapsPipeline attribute) (sleap.nn.data.pipelines.TopdownConfmapsPipeline attribute) (sleap.nn.data.pipelines.TopDownMultiClassPipeline attribute) OptimizationConfig (class in sleap.nn.config.optimization) optimizer (sleap.nn.config.optimization.OptimizationConfig attribute) output() (sleap.nn.architectures.hrnet.HigherHRNet method) output_callbacks (sleap.nn.training.Trainer attribute) output_filters (sleap.nn.architectures.hourglass.StemBlock attribute) output_key_names (sleap.nn.data.general.LambdaMap attribute) output_keys (sleap.nn.data.augmentation.ImgaugAugmenter property) (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator property) (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator property) (sleap.nn.data.confidence_maps.SingleInstanceConfidenceMapGenerator property) (sleap.nn.data.dataset_ops.Batcher property) (sleap.nn.data.dataset_ops.LambdaFilter property) (sleap.nn.data.dataset_ops.Prefetcher property) (sleap.nn.data.dataset_ops.Preloader property) (sleap.nn.data.dataset_ops.Repeater property) (sleap.nn.data.dataset_ops.Shuffler property) (sleap.nn.data.dataset_ops.Unbatcher property) (sleap.nn.data.edge_maps.PartAffinityFieldsGenerator property) (sleap.nn.data.general.KeyDeviceMover property) (sleap.nn.data.general.KeyFilter property) (sleap.nn.data.general.KeyRenamer property) (sleap.nn.data.general.LambdaMap property) (sleap.nn.data.identity.ClassMapGenerator property) (sleap.nn.data.identity.ClassVectorGenerator property) (sleap.nn.data.inference.PredictedCenterInstanceNormalizer property) (sleap.nn.data.instance_centroids.InstanceCentroidFinder property) (sleap.nn.data.instance_cropping.InstanceCropper property) (sleap.nn.data.normalization.Normalizer property) (sleap.nn.data.pipelines.Pipeline property) (sleap.nn.data.providers.LabelsReader property) (sleap.nn.data.providers.VideoReader property) (sleap.nn.data.resizing.PointsRescaler property) (sleap.nn.data.resizing.Resizer property) (sleap.nn.data.resizing.SizeMatcher property) (sleap.nn.data.training.KeyMapper property) (sleap.nn.training.BottomUpModelTrainer property) (sleap.nn.training.BottomUpMultiClassModelTrainer property) (sleap.nn.training.CentroidConfmapsModelTrainer property) (sleap.nn.training.SingleInstanceModelTrainer property) (sleap.nn.training.TopdownConfmapsModelTrainer property) (sleap.nn.training.TopDownMultiClassModelTrainer property) (sleap.nn.training.Trainer property) output_scale (sleap.nn.architectures.hrnet.HigherHRNet property) (sleap.nn.architectures.resnet.ResNetv1 property) output_stride (sleap.nn.architectures.encoder_decoder.EncoderDecoder property) (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder property) (sleap.nn.architectures.resnet.ResNetv1 property) (sleap.nn.architectures.upsampling.UpsamplingStack attribute) (sleap.nn.config.model.CenteredInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.CentroidsHeadConfig attribute) (sleap.nn.config.model.ClassMapsHeadConfig attribute) (sleap.nn.config.model.ClassVectorsHeadConfig attribute) (sleap.nn.config.model.HourglassConfig attribute) (sleap.nn.config.model.LEAPConfig attribute) (sleap.nn.config.model.MultiInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.PartAffinityFieldsHeadConfig attribute) (sleap.nn.config.model.PretrainedEncoderConfig attribute) (sleap.nn.config.model.ResNetConfig attribute) (sleap.nn.config.model.SingleInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.UNetConfig attribute) (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.SingleInstanceConfidenceMapGenerator attribute) (sleap.nn.data.edge_maps.PartAffinityFieldsGenerator attribute) (sleap.nn.data.identity.ClassMapGenerator attribute) (sleap.nn.heads.CenteredInstanceConfmapsHead attribute) (sleap.nn.heads.CentroidConfmapsHead attribute) (sleap.nn.heads.ClassMapsHead attribute) (sleap.nn.heads.ClassVectorsHead attribute) (sleap.nn.heads.MultiInstanceConfmapsHead attribute) (sleap.nn.heads.OffsetRefinementHead attribute) (sleap.nn.heads.PartAffinityFieldsHead attribute) (sleap.nn.heads.SingleInstanceConfmapsHead attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) outputs (sleap.nn.config.training_job.TrainingJobConfig attribute) OutputsConfig (class in sleap.nn.config.outputs) ownership (sleap.info.feature_suggestions.ItemStack attribute) P package() (sleap.nn.training.Trainer method) pad_to_stride (sleap.nn.config.data.PreprocessingConfig attribute) (sleap.nn.data.resizing.Resizer attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.InferenceLayer attribute) (sleap.nn.inference.MoveNetInferenceLayer attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) pad_to_stride() (in module sleap.nn.data.resizing) paf_line_points (sleap.nn.inference.BottomUpPredictor attribute) paf_output_stride (sleap.nn.inference.BottomUpInferenceLayer attribute) paf_scorer (sleap.nn.inference.BottomUpInferenceLayer attribute) pafs (sleap.nn.config.model.MultiInstanceConfig attribute) pafs_head (sleap.nn.data.pipelines.BottomUpPipeline attribute) pafs_ind (sleap.nn.inference.BottomUpInferenceLayer attribute) pafs_stride (sleap.nn.paf_grouping.PAFScorer attribute) PAFScorer (class in sleap.nn.paf_grouping) ParallelFeaturePipeline (class in sleap.info.feature_suggestions) parse_uri_path() (in module sleap.util) part_names (sleap.nn.config.model.CenteredInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.MultiInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.SingleInstanceConfmapsHeadConfig attribute) (sleap.nn.heads.CenteredInstanceConfmapsHead attribute), [1] (sleap.nn.heads.MultiInstanceConfmapsHead attribute), [1] (sleap.nn.heads.OffsetRefinementHead attribute), [1] (sleap.nn.heads.SingleInstanceConfmapsHead attribute), [1] (sleap.nn.paf_grouping.PAFScorer attribute) PartAffinityFieldsGenerator (class in sleap.nn.data.edge_maps) PartAffinityFieldsHead (class in sleap.nn.heads) PartAffinityFieldsHeadConfig (class in sleap.nn.config.model) PartLoss (class in sleap.nn.losses) pca() (sleap.info.feature_suggestions.ItemStack method) peak_ind (sleap.nn.paf_grouping.PeakID attribute) peak_threshold (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.MoveNetPredictor attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.SingleInstancePredictor attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) PeakID (class in sleap.nn.paf_grouping) peek() (sleap.nn.data.pipelines.Pipeline method) Pipeline (class in sleap.nn.data.pipelines) pipeline (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.inference.MoveNetPredictor attribute) (sleap.nn.inference.SingleInstancePredictor attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) pipeline_builder (sleap.nn.training.Trainer attribute) plateau_cooldown (sleap.nn.config.optimization.LearningRateScheduleConfig attribute) plateau_min_delta (sleap.nn.config.optimization.EarlyStoppingConfig attribute) (sleap.nn.config.optimization.LearningRateScheduleConfig attribute) plateau_patience (sleap.nn.config.optimization.EarlyStoppingConfig attribute) (sleap.nn.config.optimization.LearningRateScheduleConfig attribute) plot() (sleap.instance.LabeledFrame method) plot_confmaps() (in module sleap.nn.viz) plot_fn (sleap.nn.callbacks.MatplotlibSaver attribute) (sleap.nn.callbacks.TensorBoardMatplotlibWriter attribute) plot_img() (in module sleap.nn.viz) plot_instance() (in module sleap.nn.viz) plot_instances() (in module sleap.nn.viz) plot_pafs() (in module sleap.nn.viz) plot_peaks() (in module sleap.nn.viz) plot_predicted() (sleap.instance.LabeledFrame method) Point (class in sleap.instance) point_dist() (in module sleap.info.metrics) point_match_count() (in module sleap.info.metrics) point_nonmatch_count() (in module sleap.info.metrics) PointArray (class in sleap.instance) points (sleap.instance.Instance property) points_and_scores_array (sleap.instance.PredictedInstance property) points_array (sleap.instance.Instance property) points_key (sleap.nn.data.resizing.Resizer attribute) (sleap.nn.data.resizing.SizeMatcher attribute) PointsRescaler (class in sleap.nn.data.resizing) pool (sleap.nn.architectures.encoder_decoder.EncoderBlock attribute) (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) (sleap.nn.architectures.hourglass.StemBlock attribute) (sleap.nn.architectures.unet.PoolingBlock attribute) pool_before_convs (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) pooling_stride (sleap.nn.architectures.encoder_decoder.EncoderBlock attribute) (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) (sleap.nn.architectures.hourglass.StemBlock attribute) (sleap.nn.architectures.unet.PoolingBlock attribute) PoolingBlock (class in sleap.nn.architectures.unet) predict() (sleap.nn.inference.InferenceModel method) (sleap.nn.inference.Predictor method) (sleap.nn.inference.VisualPredictor method) (sleap.nn.paf_grouping.PAFScorer method) predict_on_batch() (sleap.nn.inference.InferenceModel method) predicted_instances (sleap.instance.LabeledFrame property) (sleap.io.dataset.Labels property) PredictedCenterInstanceNormalizer (class in sleap.nn.data.inference) PredictedInstance (class in sleap.instance) PredictedPoint (class in sleap.instance) PredictedPointArray (class in sleap.instance) Predictor (class in sleap.nn.inference) prefetch (sleap.nn.config.optimization.OptimizationConfig attribute) (sleap.nn.data.dataset_ops.Prefetcher attribute) Prefetcher (class in sleap.nn.data.dataset_ops) prefix (sleap.nn.callbacks.MatplotlibSaver attribute) preload_data (sleap.nn.config.optimization.OptimizationConfig attribute) Preloader (class in sleap.nn.data.dataset_ops) preprocess() (sleap.nn.inference.InferenceLayer method) PreprocessingConfig (class in sleap.nn.config.data) preset (sleap.io.videowriter.VideoWriterSkvideo attribute) pretrained (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder attribute) (sleap.nn.architectures.resnet.ResNet101 attribute) (sleap.nn.architectures.resnet.ResNet152 attribute) (sleap.nn.architectures.resnet.ResNet50 attribute) (sleap.nn.architectures.resnet.ResNetv1 attribute) (sleap.nn.config.model.PretrainedEncoderConfig attribute) PretrainedEncoderConfig (class in sleap.nn.config.model) preview_image (sleap.skeleton.Skeleton attribute) probability (sleap.nn.data.augmentation.RandomFlipper attribute) profile_graph (sleap.nn.config.outputs.TensorBoardConfig attribute) ProgressReporterZMQ (class in sleap.nn.callbacks) provenance (sleap.io.dataset.Labels attribute) providers (sleap.nn.data.pipelines.Pipeline attribute) prune_shifted_instances() (sleap.nn.tracking.FlowCandidateMaker method) publish_address (sleap.nn.config.outputs.ZMQConfig attribute) publish_updates (sleap.nn.config.outputs.ZMQConfig attribute) push_back_message() (sleap.message.Receiver method) R random_crop (sleap.nn.config.optimization.AugmentationConfig attribute) random_crop_height (sleap.nn.config.optimization.AugmentationConfig attribute) random_crop_width (sleap.nn.config.optimization.AugmentationConfig attribute) random_flip (sleap.nn.config.optimization.AugmentationConfig attribute) RandomCropper (class in sleap.nn.data.augmentation) RandomFlipper (class in sleap.nn.data.augmentation) RateColumn (class in sleap.nn.inference) read() (in module sleap.io.format.main) (sleap.io.format.adaptor.Adaptor method) (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) (sleap.io.format.coco.LabelsCocoAdaptor class method) (sleap.io.format.deeplabcut.LabelsDeepLabCutCsvAdaptor class method) (sleap.io.format.deeplabcut.LabelsDeepLabCutYamlAdaptor class method) (sleap.io.format.deepposekit.LabelsDeepPoseKitAdaptor class method) (sleap.io.format.genericjson.GenericJsonAdaptor method) (sleap.io.format.hdf5.LabelsV1Adaptor class method) (sleap.io.format.labels_json.LabelsJsonAdaptor class method) (sleap.io.format.leap_matlab.LabelsLeapMatlabAdaptor class method) (sleap.io.format.ndx_pose.NDXPoseAdaptor method) (sleap.io.format.nix.NixAdaptor class method) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor class method) (sleap.io.format.text.TextAdaptor method) reader() (in module sleap.io.visuals) Receiver (class in sleap.message) reduce_on_plateau (sleap.nn.config.optimization.LearningRateScheduleConfig attribute) reduction_factor (sleap.nn.config.optimization.LearningRateScheduleConfig attribute) refine_convs (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) (sleap.nn.architectures.upsampling.UpsamplingStack attribute) (sleap.nn.config.model.UpsamplingConfig attribute) refine_convs_activation (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) refine_convs_batch_norm (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) refine_convs_batch_norm_before_activation (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) refine_convs_batchnorm (sleap.nn.architectures.upsampling.UpsamplingStack attribute) refine_convs_filters (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) (sleap.nn.architectures.upsampling.UpsamplingStack attribute) refine_convs_filters_rate (sleap.nn.architectures.upsampling.UpsamplingStack attribute) refine_convs_first_filters (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) refine_convs_kernel_size (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) refine_convs_use_bias (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) refinement (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) relabel_node() (sleap.skeleton.Skeleton method) relabel_nodes() (sleap.skeleton.Skeleton method) remove() (sleap.io.dataset.Labels method) remove_all_tracks() (sleap.io.dataset.Labels method) remove_empty_frames() (sleap.io.dataset.Labels method) remove_empty_instances() (sleap.instance.LabeledFrame method) (sleap.io.dataset.Labels method) remove_empty_tracks_from_matrices() (in module sleap.info.write_tracking_h5) remove_frame() (sleap.io.dataset.Labels method) (sleap.io.dataset.LabelsDataCache method) remove_frames() (sleap.io.dataset.Labels method) remove_instance() (sleap.io.dataset.Labels method) (sleap.io.dataset.LabelsDataCache method) remove_predictions() (sleap.io.dataset.Labels method) remove_second_bests_from_cost_matrix() (in module sleap.nn.tracker.kalman) remove_suggestion() (sleap.io.dataset.Labels method) remove_track() (sleap.io.dataset.Labels method) remove_untracked() (sleap.instance.LabeledFrame method) remove_untracked_instances() (sleap.io.dataset.Labels method) remove_unused_tracks() (sleap.io.dataset.Labels method) remove_user_instances() (sleap.io.dataset.Labels method) remove_video() (sleap.io.dataset.Labels method) (sleap.io.dataset.LabelsDataCache method) rename_skeleton() (sleap.skeleton.Skeleton class method) render() (sleap.nn.inference.RateColumn method) repeat (sleap.nn.data.dataset_ops.Repeater attribute) Repeater (class in sleap.nn.data.dataset_ops) replace_path() (in module sleap.nn.evals) report_period (sleap.nn.inference.Predictor property) reset() (sleap.io.video.HDF5Video method) (sleap.io.video.ImgStoreVideo method) (sleap.io.video.MediaVideo method) (sleap.io.video.NumpyVideo method) (sleap.io.video.SingleImageVideo method) reset_input_layer() (in module sleap.nn.utils) reshuffle_each_iteration (sleap.nn.data.dataset_ops.Shuffler attribute) resize_and_pad_to_target (sleap.nn.config.data.PreprocessingConfig attribute) resize_image() (in module sleap.io.visuals) (in module sleap.nn.data.resizing) Resizer (class in sleap.nn.data.resizing) resnet (sleap.nn.config.model.BackboneConfig attribute) ResNet101 (class in sleap.nn.architectures.resnet) ResNet152 (class in sleap.nn.architectures.resnet) ResNet50 (class in sleap.nn.architectures.resnet) ResNetConfig (class in sleap.nn.config.model) ResNetv1 (class in sleap.nn.architectures.resnet) result() (sleap.nn.losses.PartLoss method) return_class_maps (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) return_class_vectors (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) return_confmaps (sleap.nn.inference.BottomUpInferenceLayer attribute) (sleap.nn.inference.BottomUpMultiClassInferenceLayer attribute) (sleap.nn.inference.CentroidCrop attribute) (sleap.nn.inference.FindInstancePeaks attribute) (sleap.nn.inference.SingleInstanceInferenceLayer attribute) (sleap.nn.inference.TopDownMultiClassFindPeaks attribute) return_crops (sleap.nn.inference.CentroidCrop attribute) return_paf_graph (sleap.nn.inference.BottomUpInferenceLayer attribute) return_pafs (sleap.nn.inference.BottomUpInferenceLayer attribute) robust_best_instance (sleap.nn.tracking.Tracker attribute) rotate (sleap.nn.config.optimization.AugmentationConfig attribute) rotation_max_angle (sleap.nn.config.optimization.AugmentationConfig attribute) rotation_min_angle (sleap.nn.config.optimization.AugmentationConfig attribute) run() (sleap.info.feature_suggestions.ParallelFeaturePipeline class method) (sleap.io.asyncvideo.AsyncVideoServer method) (sleap.io.visuals.VideoMarkerThread method) (sleap.nn.data.pipelines.Pipeline method) run_name (sleap.nn.config.outputs.OutputsConfig attribute) run_name_prefix (sleap.nn.config.outputs.OutputsConfig attribute) run_name_suffix (sleap.nn.config.outputs.OutputsConfig attribute) run_path (sleap.nn.config.outputs.OutputsConfig property) (sleap.nn.training.Trainer attribute) run_tracker() (in module sleap.nn.tracking) runs_folder (sleap.nn.config.outputs.OutputsConfig attribute) S safe_builder() (sleap.io.videowriter.VideoWriter static method) safely_generate() (sleap.nn.inference.VisualPredictor method) sample() (sleap.info.feature_suggestions.FrameGroupSet method) sample_groups() (sleap.info.feature_suggestions.ItemStack method) sanitize_scope_name() (in module sleap.nn.training) save() (sleap.io.dataset.Labels method) save_all_hdf5() (sleap.skeleton.Skeleton class method) save_dict_to_hdf5() (in module sleap.util) save_file() (sleap.io.dataset.Labels class method) save_folder (sleap.nn.callbacks.MatplotlibSaver attribute) save_frame_data_hdf5() (sleap.io.dataset.Labels method) save_frame_data_imgstore() (sleap.io.dataset.Labels method) save_hdf5() (sleap.skeleton.Skeleton method) save_json() (sleap.nn.config.training_job.TrainingJobConfig method) (sleap.skeleton.Skeleton method) save_labeled_video() (in module sleap.io.visuals) save_outputs (sleap.nn.config.outputs.OutputsConfig attribute) save_shifted_instances (sleap.nn.tracking.FlowCandidateMaker attribute) save_visualizations (sleap.nn.config.outputs.OutputsConfig attribute) scale (sleap.nn.architectures.common.IntermediateFeature property) (sleap.nn.config.optimization.AugmentationConfig attribute) (sleap.nn.data.resizing.Resizer attribute) scale_image_range() (in module sleap.nn.data.normalization) scale_key (sleap.nn.data.resizing.Resizer attribute) (sleap.nn.data.resizing.SizeMatcher attribute) scale_max (sleap.nn.config.optimization.AugmentationConfig attribute) scale_min (sleap.nn.config.optimization.AugmentationConfig attribute) scale_to_imagenet_caffe_mode() (in module sleap.nn.data.normalization) scale_to_imagenet_tf_mode() (in module sleap.nn.data.normalization) scale_to_imagenet_torch_mode() (in module sleap.nn.data.normalization) score (sleap.nn.paf_grouping.EdgeConnection attribute) score_paf_lines() (in module sleap.nn.paf_grouping) (sleap.nn.paf_grouping.PAFScorer method) score_paf_lines_batch() (in module sleap.nn.paf_grouping) scores (sleap.instance.PredictedInstance property) search_path_hints (sleap.nn.config.data.LabelsConfig attribute) send_array() (sleap.message.Sender method) send_dict() (sleap.message.Sender method) Sender (class in sleap.message) set_lr() (sleap.nn.callbacks.TrainingControllerZMQ method) set_suggestions() (sleap.io.dataset.Labels method) setup() (sleap.nn.training.Trainer method) setup_checkpointing() (in module sleap.nn.training) setup_losses() (in module sleap.nn.training) setup_metrics() (in module sleap.nn.training) setup_new_run_folder() (in module sleap.nn.training) setup_optimization_callbacks() (in module sleap.nn.training) setup_optimizer() (in module sleap.nn.training) setup_output_callbacks() (in module sleap.nn.training) setup_tensorboard() (in module sleap.nn.training) setup_visualization() (in module sleap.nn.training) setup_zmq_callbacks() (in module sleap.nn.training) shape (sleap.io.video.Video property) shuffle (sleap.nn.data.dataset_ops.Shuffler attribute) shuffle_buffer_size (sleap.nn.config.optimization.OptimizationConfig attribute) Shuffler (class in sleap.nn.data.dataset_ops) sigma (sleap.nn.config.model.CenteredInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.CentroidsHeadConfig attribute) (sleap.nn.config.model.ClassMapsHeadConfig attribute) (sleap.nn.config.model.MultiInstanceConfmapsHeadConfig attribute) (sleap.nn.config.model.PartAffinityFieldsHeadConfig attribute) (sleap.nn.config.model.SingleInstanceConfmapsHeadConfig attribute) (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.SingleInstanceConfidenceMapGenerator attribute) (sleap.nn.data.edge_maps.PartAffinityFieldsGenerator attribute) (sleap.nn.data.identity.ClassMapGenerator attribute) (sleap.nn.heads.CenteredInstanceConfmapsHead attribute) (sleap.nn.heads.CentroidConfmapsHead attribute) (sleap.nn.heads.ClassMapsHead attribute) (sleap.nn.heads.MultiInstanceConfmapsHead attribute) (sleap.nn.heads.PartAffinityFieldsHead attribute) (sleap.nn.heads.SingleInstanceConfmapsHead attribute) sigma_threshold (sleap.nn.heads.OffsetRefinementHead attribute), [1] similarity_function (sleap.nn.tracking.Tracker attribute) similarity_function() (sleap.nn.tracking.FlowMaxTracker method) simple_block() (in module sleap.nn.architectures.hrnet) SimpleCandidateMaker (class in sleap.nn.tracking) SimpleConvBlock (class in sleap.nn.architectures.encoder_decoder) SimpleMaxTracker (class in sleap.nn.tracking) SimpleMaxTracksCandidateMaker (class in sleap.nn.tracking) SimpleTracker (class in sleap.nn.tracking) SimpleUpsamplingBlock (class in sleap.nn.architectures.encoder_decoder) single_instance (sleap.nn.config.model.HeadsConfig attribute) single_instance_confmap_head (sleap.nn.data.pipelines.SingleInstanceConfmapsPipeline attribute) single_instance_layer (sleap.nn.inference.SingleInstanceInferenceModel attribute) SingleImageVideo (class in sleap.io.video) SingleInstanceConfidenceMapGenerator (class in sleap.nn.data.confidence_maps) SingleInstanceConfmapsHead (class in sleap.nn.heads) SingleInstanceConfmapsHeadConfig (class in sleap.nn.config.model) SingleInstanceConfmapsPipeline (class in sleap.nn.data.pipelines) SingleInstanceInferenceLayer (class in sleap.nn.inference) SingleInstanceInferenceModel (class in sleap.nn.inference) SingleInstanceModelTrainer (class in sleap.nn.training) SingleInstancePredictor (class in sleap.nn.inference) SizeMatcher (class in sleap.nn.data.resizing) Skeleton (class in sleap.skeleton) skeleton (sleap.io.dataset.Labels property) skeletons (sleap.io.dataset.Labels attribute) (sleap.nn.config.data.LabelsConfig attribute) (sleap.nn.data.edge_maps.PartAffinityFieldsGenerator attribute) (sleap.nn.data.instance_centroids.InstanceCentroidFinder attribute) skip_add (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) (sleap.nn.architectures.upsampling.UpsamplingStack attribute) skip_connection (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) skip_connections (sleap.nn.architectures.resnet.ResNet101 attribute) (sleap.nn.architectures.resnet.ResNet152 attribute) (sleap.nn.architectures.resnet.ResNet50 attribute) (sleap.nn.architectures.resnet.ResNetv1 attribute) (sleap.nn.config.model.UpsamplingConfig attribute) sleap.info.align module sleap.info.feature_suggestions module sleap.info.labels module sleap.info.metrics module sleap.info.summary module sleap.info.trackcleaner module sleap.info.write_tracking_h5 module sleap.instance module sleap.io.asyncvideo module sleap.io.convert module sleap.io.dataset module sleap.io.format.adaptor module sleap.io.format.alphatracker module sleap.io.format.coco module sleap.io.format.csv module sleap.io.format.deeplabcut module sleap.io.format.deepposekit module sleap.io.format.dispatch module sleap.io.format.filehandle module sleap.io.format.genericjson module sleap.io.format.hdf5 module sleap.io.format.labels_json module sleap.io.format.leap_matlab module sleap.io.format.main module sleap.io.format.ndx_pose module sleap.io.format.nix module sleap.io.format.sleap_analysis module sleap.io.format.text module sleap.io.legacy module sleap.io.pathutils module sleap.io.video module sleap.io.videowriter module sleap.io.visuals module sleap.message module sleap.nn.architectures.common module sleap.nn.architectures.encoder_decoder module sleap.nn.architectures.hourglass module sleap.nn.architectures.hrnet module sleap.nn.architectures.leap module sleap.nn.architectures.pretrained_encoders module sleap.nn.architectures.resnet module sleap.nn.architectures.unet module sleap.nn.architectures.upsampling module sleap.nn.callbacks module sleap.nn.config.data module sleap.nn.config.model module sleap.nn.config.optimization module sleap.nn.config.outputs module sleap.nn.config.training_job module sleap.nn.config.utils module sleap.nn.data.augmentation module sleap.nn.data.confidence_maps module sleap.nn.data.dataset_ops module sleap.nn.data.edge_maps module sleap.nn.data.general module sleap.nn.data.grouping module sleap.nn.data.identity module sleap.nn.data.inference module sleap.nn.data.instance_centroids module sleap.nn.data.instance_cropping module sleap.nn.data.normalization module sleap.nn.data.offset_regression module sleap.nn.data.pipelines module sleap.nn.data.providers module sleap.nn.data.resizing module sleap.nn.data.training module sleap.nn.data.utils module sleap.nn.evals module sleap.nn.heads module sleap.nn.identity module sleap.nn.inference module sleap.nn.losses module sleap.nn.model module sleap.nn.paf_grouping module sleap.nn.peak_finding module sleap.nn.system module sleap.nn.tracker.components module sleap.nn.tracker.kalman module sleap.nn.tracking module sleap.nn.training module sleap.nn.utils module sleap.nn.viz module sleap.skeleton module sleap.util module sleap_version (sleap.nn.config.training_job.TrainingJobConfig attribute) SleapAnalysisAdaptor (class in sleap.io.format.sleap_analysis) SleapObjectType (class in sleap.io.format.adaptor) smooth_imgs() (in module sleap.nn.peak_finding) sorted_edge_inds (sleap.nn.paf_grouping.PAFScorer attribute) source_video (sleap.io.video.HDF5Video property) source_video_available (sleap.io.video.HDF5Video property) split() (sleap.io.dataset.Labels method) split_by_inds (sleap.nn.config.data.LabelsConfig attribute) split_labels() (in module sleap.nn.data.training) split_labels_reader() (in module sleap.nn.data.training) split_labels_train_val() (in module sleap.nn.data.training) src_node_ind (sleap.nn.paf_grouping.EdgeType attribute) src_peak_ind (sleap.nn.paf_grouping.EdgeConnection attribute) stack_configs (sleap.nn.architectures.resnet.ResNetv1 attribute) stack_v1() (in module sleap.nn.architectures.resnet) stacks (sleap.nn.architectures.encoder_decoder.EncoderDecoder attribute) (sleap.nn.architectures.hourglass.Hourglass attribute) (sleap.nn.config.model.HourglassConfig attribute) (sleap.nn.config.model.LEAPConfig attribute) (sleap.nn.config.model.UNetConfig attribute) StatisticSeries (class in sleap.info.summary) stem_blocks (sleap.nn.architectures.unet.UNet attribute) stem_features_stride (sleap.nn.architectures.encoder_decoder.EncoderDecoder property) stem_filters (sleap.nn.architectures.hourglass.Hourglass attribute) stem_kernel_size (sleap.nn.architectures.unet.UNet attribute) stem_stack (sleap.nn.architectures.encoder_decoder.EncoderDecoder property) (sleap.nn.architectures.hourglass.Hourglass property) (sleap.nn.architectures.unet.UNet property) stem_stride (sleap.nn.architectures.hourglass.Hourglass attribute) (sleap.nn.config.model.HourglassConfig attribute) (sleap.nn.config.model.UNetConfig attribute) StemBlock (class in sleap.nn.architectures.hourglass) stop_training_on_plateau (sleap.nn.config.optimization.EarlyStoppingConfig attribute) stride (sleap.nn.architectures.common.IntermediateFeature attribute) subscribe_to_controller (sleap.nn.config.outputs.ZMQConfig attribute) suggestions (sleap.io.dataset.Labels attribute) summary() (in module sleap.nn.system) symmetric_inds (sleap.nn.data.augmentation.RandomFlipper attribute) (sleap.skeleton.Skeleton property) symmetries (sleap.skeleton.Skeleton property) symmetries_full (sleap.skeleton.Skeleton property) symmetry_names (sleap.skeleton.Skeleton property) T tag (sleap.nn.callbacks.TensorBoardMatplotlibWriter attribute) tags (sleap.nn.config.outputs.OutputsConfig attribute) target_height (sleap.nn.config.data.PreprocessingConfig attribute) target_width (sleap.nn.config.data.PreprocessingConfig attribute) tensor (sleap.nn.architectures.common.IntermediateFeature attribute) tensorboard (sleap.nn.config.outputs.OutputsConfig attribute) TensorBoardConfig (class in sleap.nn.config.outputs) TensorBoardMatplotlibWriter (class in sleap.nn.callbacks) test_inds (sleap.nn.config.data.LabelsConfig attribute) test_labels (sleap.nn.config.data.LabelsConfig attribute) (sleap.nn.training.DataReaders property) test_labels_reader (sleap.nn.training.DataReaders attribute) text (sleap.io.format.filehandle.FileHandle property) TextAdaptor (class in sleap.io.format.text) tf_linear_sum_assignment() (in module sleap.nn.utils) tile_channels() (in module sleap.nn.architectures.resnet) to_array() (sleap.instance.PredictedPointArray class method) to_dict() (sleap.io.dataset.Labels method) (sleap.skeleton.Skeleton static method) to_hdf5() (sleap.io.video.Video method) to_imgstore() (sleap.io.video.Video method) to_json() (sleap.io.dataset.Labels method) (sleap.nn.config.training_job.TrainingJobConfig method) (sleap.skeleton.Skeleton method) to_pipeline() (sleap.io.dataset.Labels method) (sleap.io.video.Video method) TopdownConfmapsModelTrainer (class in sleap.nn.training) TopdownConfmapsPipeline (class in sleap.nn.data.pipelines) TopDownInferenceModel (class in sleap.nn.inference) TopDownMultiClassFindPeaks (class in sleap.nn.inference) TopDownMultiClassInferenceModel (class in sleap.nn.inference) TopDownMultiClassModelTrainer (class in sleap.nn.training) TopDownMultiClassPipeline (class in sleap.nn.data.pipelines) TopDownMultiClassPredictor (class in sleap.nn.inference) TopDownPredictor (class in sleap.nn.inference) toposort_edges() (in module sleap.nn.paf_grouping) Track (class in sleap.instance) track() (sleap.nn.tracking.KalmanTracker method) (sleap.nn.tracking.Tracker method) track_set_instance() (sleap.io.dataset.Labels method) track_swap() (sleap.io.dataset.Labels method) (sleap.io.dataset.LabelsDataCache method) track_window (sleap.nn.tracking.FlowCandidateMaker attribute) (sleap.nn.tracking.Tracker attribute) TrackCleaner (class in sleap.nn.tracking) tracked_instances (sleap.instance.LabeledFrame property) Tracker (class in sleap.nn.tracking) tracker (sleap.nn.inference.BottomUpPredictor attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) (sleap.nn.inference.TopDownPredictor attribute) tracks (sleap.io.dataset.Labels attribute) (sleap.nn.data.providers.LabelsReader property) (sleap.nn.inference.BottomUpMultiClassPredictor attribute) (sleap.nn.inference.TopDownMultiClassPredictor attribute) train() (sleap.nn.training.Trainer method) Trainer (class in sleap.nn.training) training_inds (sleap.nn.config.data.LabelsConfig attribute) training_instances (sleap.instance.LabeledFrame property) training_labels (sleap.nn.config.data.LabelsConfig attribute) (sleap.nn.training.DataReaders property) training_labels_reader (sleap.nn.training.DataReaders attribute) training_pipeline (sleap.nn.training.Trainer attribute) training_viz_pipeline (sleap.nn.training.Trainer attribute) TrainingControllerZMQ (class in sleap.nn.callbacks) TrainingJobConfig (class in sleap.nn.config.training_job) transform_dataset() (sleap.nn.data.augmentation.ImgaugAugmenter method) (sleap.nn.data.augmentation.RandomCropper method) (sleap.nn.data.augmentation.RandomFlipper method) (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator method) (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator method) (sleap.nn.data.confidence_maps.SingleInstanceConfidenceMapGenerator method) (sleap.nn.data.dataset_ops.Batcher method) (sleap.nn.data.dataset_ops.LambdaFilter method) (sleap.nn.data.dataset_ops.Prefetcher method) (sleap.nn.data.dataset_ops.Preloader method) (sleap.nn.data.dataset_ops.Repeater method) (sleap.nn.data.dataset_ops.Shuffler method) (sleap.nn.data.dataset_ops.Unbatcher method) (sleap.nn.data.edge_maps.PartAffinityFieldsGenerator method) (sleap.nn.data.general.KeyDeviceMover method) (sleap.nn.data.general.KeyFilter method) (sleap.nn.data.general.KeyRenamer method) (sleap.nn.data.general.LambdaMap method) (sleap.nn.data.identity.ClassMapGenerator method) (sleap.nn.data.identity.ClassVectorGenerator method) (sleap.nn.data.inference.PredictedCenterInstanceNormalizer method) (sleap.nn.data.instance_centroids.InstanceCentroidFinder method) (sleap.nn.data.instance_cropping.InstanceCropper method) (sleap.nn.data.normalization.Normalizer method) (sleap.nn.data.resizing.PointsRescaler method) (sleap.nn.data.resizing.Resizer method) (sleap.nn.data.resizing.SizeMatcher method) (sleap.nn.data.training.KeyMapper method) transform_points() (sleap.instance.Instance method) transformers (sleap.nn.data.pipelines.Pipeline attribute) translate (sleap.nn.config.optimization.AugmentationConfig attribute) translate_max (sleap.nn.config.optimization.AugmentationConfig attribute) translate_min (sleap.nn.config.optimization.AugmentationConfig attribute) transposed_conv (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) (sleap.nn.architectures.upsampling.UpsamplingStack attribute) transposed_conv_activation (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) transposed_conv_batch_norm (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) transposed_conv_batch_norm_before_activation (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) transposed_conv_batchnorm (sleap.nn.architectures.upsampling.UpsamplingStack attribute) transposed_conv_filters (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) (sleap.nn.architectures.upsampling.UpsamplingStack attribute) transposed_conv_filters_rate (sleap.nn.architectures.upsampling.UpsamplingStack attribute) transposed_conv_kernel_size (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) (sleap.nn.architectures.upsampling.UpsamplingStack attribute) (sleap.nn.config.model.UpsamplingConfig attribute) transposed_conv_use_bias (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) tuples_to_suggestions() (sleap.info.feature_suggestions.ParallelFeaturePipeline class method) U unbatch (sleap.nn.data.instance_cropping.InstanceCropper attribute) Unbatcher (class in sleap.nn.data.dataset_ops) UNet (class in sleap.nn.architectures.unet) unet (sleap.nn.config.model.BackboneConfig attribute) UNetConfig (class in sleap.nn.config.model) UnetPretrainedEncoder (class in sleap.nn.architectures.pretrained_encoders) uniform_noise (sleap.nn.config.optimization.AugmentationConfig attribute) uniform_noise_max_val (sleap.nn.config.optimization.AugmentationConfig attribute) uniform_noise_min_val (sleap.nn.config.optimization.AugmentationConfig attribute) unique_tracks_in_queue (sleap.nn.tracking.Tracker property) uniquify() (in module sleap.util) unlabeled_suggestions (sleap.io.dataset.Labels property) unmatched_instances (sleap.nn.tracker.components.FrameMatches attribute) unnormalize_bboxes() (in module sleap.nn.data.instance_cropping) unrag (sleap.nn.data.dataset_ops.Batcher attribute) unrag_example() (in module sleap.nn.data.utils) unrag_tensor() (in module sleap.nn.data.utils) unused_predictions (sleap.instance.LabeledFrame property) up_blocks (sleap.nn.architectures.hourglass.Hourglass attribute) (sleap.nn.architectures.leap.LeapCNN attribute) (sleap.nn.architectures.pretrained_encoders.UnetPretrainedEncoder property) (sleap.nn.architectures.unet.UNet attribute) up_convs_per_block (sleap.nn.architectures.leap.LeapCNN attribute) up_interpolate (sleap.nn.architectures.leap.LeapCNN attribute) (sleap.nn.architectures.unet.UNet attribute) (sleap.nn.config.model.LEAPConfig attribute) (sleap.nn.config.model.UNetConfig attribute) update() (sleap.io.dataset.LabelsDataCache method) update_counts_for_frame() (sleap.io.dataset.LabelsDataCache method) update_state() (sleap.nn.losses.PartLoss method) upsampling (sleap.nn.config.model.ResNetConfig attribute) upsampling_stack (sleap.nn.architectures.resnet.ResNet101 attribute) (sleap.nn.architectures.resnet.ResNet152 attribute) (sleap.nn.architectures.resnet.ResNet50 attribute) (sleap.nn.architectures.resnet.ResNetv1 attribute) upsampling_stride (sleap.nn.architectures.encoder_decoder.DecoderBlock attribute) (sleap.nn.architectures.encoder_decoder.SimpleUpsamplingBlock attribute) (sleap.nn.architectures.upsampling.UpsamplingStack attribute) UpsamplingBlock (class in sleap.nn.architectures.hourglass) UpsamplingConfig (class in sleap.nn.config.model) UpsamplingStack (class in sleap.nn.architectures.upsampling) usable_cpu_count() (in module sleap.util) use_bias (sleap.nn.architectures.encoder_decoder.SimpleConvBlock attribute) use_cpu_only() (in module sleap.nn.system) use_first_gpu() (in module sleap.nn.system) use_gpu() (in module sleap.nn.system) use_last_gpu() (in module sleap.nn.system) user_instances (sleap.instance.LabeledFrame property) (sleap.io.dataset.Labels property) user_instances_only (sleap.nn.data.providers.LabelsReader attribute) user_labeled_frame_inds (sleap.io.dataset.Labels property) user_labeled_frames (sleap.io.dataset.Labels property) V val_batches_per_epoch (sleap.nn.config.optimization.OptimizationConfig attribute) validate_pipeline() (sleap.nn.data.pipelines.Pipeline method) validation_fraction (sleap.nn.config.data.LabelsConfig attribute) validation_inds (sleap.nn.config.data.LabelsConfig attribute) validation_labels (sleap.nn.config.data.LabelsConfig attribute) (sleap.nn.training.DataReaders property) validation_labels_reader (sleap.nn.training.DataReaders attribute) validation_pipeline (sleap.nn.training.Trainer attribute) validation_viz_pipeline (sleap.nn.training.Trainer attribute) version (sleap.nn.config.model.ResNetConfig attribute) Video (class in sleap.io.video) video (sleap.instance.Instance property) (sleap.io.dataset.Labels property) (sleap.nn.data.providers.VideoReader attribute) video_ind (sleap.nn.data.providers.VideoReader attribute) VideoMarkerThread (class in sleap.io.visuals) VideoReader (class in sleap.nn.data.providers) videos (sleap.io.dataset.Labels attribute) (sleap.nn.data.providers.LabelsReader property) (sleap.nn.data.providers.VideoReader property) VideoWriter (class in sleap.io.videowriter) VideoWriterOpenCV (class in sleap.io.videowriter) VideoWriterSkvideo (class in sleap.io.videowriter) visualization_callbacks (sleap.nn.training.Trainer attribute) visualizations (sleap.nn.config.outputs.TensorBoardConfig attribute) VisualPredictor (class in sleap.nn.inference) W weak_filename_match() (in module sleap.util) weight (sleap.skeleton.Node attribute) weights (sleap.nn.config.model.ResNetConfig attribute) width (sleap.io.video.HDF5Video property) (sleap.io.video.ImgStoreVideo property) (sleap.io.video.MediaVideo property) (sleap.io.video.NumpyVideo property) (sleap.io.video.SingleImageVideo property) (sleap.io.videowriter.VideoWriterSkvideo attribute) with_offsets (sleap.nn.data.confidence_maps.InstanceConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.MultiConfidenceMapGenerator attribute) (sleap.nn.data.confidence_maps.SingleInstanceConfidenceMapGenerator attribute) with_track_only (sleap.nn.data.providers.LabelsReader attribute) with_user_labels_only() (sleap.io.dataset.Labels method) write() (in module sleap.io.format.main) (sleap.io.format.adaptor.Adaptor method) (sleap.io.format.alphatracker.AlphaTrackerAdaptor method) (sleap.io.format.csv.CSVAdaptor class method) (sleap.io.format.genericjson.GenericJsonAdaptor method) (sleap.io.format.hdf5.LabelsV1Adaptor class method) (sleap.io.format.labels_json.LabelsJsonAdaptor class method) (sleap.io.format.ndx_pose.NDXPoseAdaptor method) (sleap.io.format.nix.NixAdaptor class method) (sleap.io.format.sleap_analysis.SleapAnalysisAdaptor class method) (sleap.io.format.text.TextAdaptor method) write_csv_file() (in module sleap.info.write_tracking_h5) write_logs (sleap.nn.config.outputs.TensorBoardConfig attribute) write_occupancy_file() (in module sleap.info.write_tracking_h5) writer() (in module sleap.io.visuals) Z zip_outputs (sleap.nn.config.outputs.OutputsConfig attribute) zmq (sleap.nn.config.outputs.OutputsConfig attribute) ZMQConfig (class in sleap.nn.config.outputs)
